LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr5g00392	ATGTCTATAATCGAGGCCCAGACCGTCGATTGTGTTCATCAACGCAGCGGAGGTGGTGCCGATCACCACCGTGCCCCAAGCAAACGTAAATTTGATGATTTCACGGCTGCCTTTAGCGATGACGGGGAAAATTTGGGGGATTTTCGTGACTTAGTATCAGCAAGAATGAGGAAAGATGAACCTAAAGCCGAGAATTCTTGCAATTTTCAAACTTTTAATGGGTCTCCCCTTGATGTTGTTGGTACTAGGATACCGGGCACAGCCTCGAATGCTTGTTCGTCCCGGTCTGAGTCGTCTGGGGCATGGTCCAAGTTGCATTTTTTCATTCGATTGATGTCAGAAGGAAAAACTATGGTACTGGAAGCTTGTCCAAAAGATACGGTAAAATCGATTCATGAACGTATCCAAGCCATTACGGGAATTCCGCTCTTTGAACAAAGACTGATATATATGGGTAAACAGCTTCAGTTGGAACAGACTTTGGTCGATTGTGCGATTGAGAGAGATTGCCATCTTCAATTGGTTGGGCGCATGCGCAGCACAGAACATCCTCAAGCTTGGCAGGTAATAAATGATATGGTTTCGTTAATTTGGCGTCTCTGCAGGGGTGAAGTGCGACATGATGCCTTGAAAATTATCAAAGGCCTCGTGACTGAATATTTAAAAATGACTACTAAAATTGATATTGATGCAGCTTCTGGATATTTCCAGATATTTTTGTCTTCATCTGCTCCGCTTGTGCTAGTTATGCTCTACATGTCACCCTATGTAGGTAACAAAGAATGTGCCGATTGTTCAATTAGGCATTTTATGAGTTCCTGTCGCAGTACCTTGTCTAAATCATTGCATACTAAGTGTGCCCGTGTAGTGCTGGAGTTTTGCAAATTACTTAGAAGCGCAGGTCCTGAGGATTCTTTGTATCGTTGTTGTCGAAGCACCTTTGGGTCTTTATTGGAGACTGCTAGCATTTCCTATGTTTGTGAGTGGGACAAGGAGTTGATTTTAATTGAAGATATTATCCCTTTTGTTTGGGAGATTGCAAATAGACTGTTGAGGGCTTTGGATCTGAGTATGGAATCCCCCACTAGCGTAGGGCCATCATCAAGTGATGTGCAGGATTTTGCTGCATTCTTACTCCCTCTAAGGACTAGAATCAACAAGCCACAAGATTTCAGGAGTCTATATTCTTTGAAGCCTAATGAAAAACTAACTAATCTCCAGTTATTTGTGGAAGAAGATGATATTCATCATATATTTAGGAAAATATTACAAAAAATGGATCAGTGCCTTAATAAAATGCAGGAAATTTTGACTGGCAAGAAACGAGAGGAGGGAGATAATCTTTATTCAGCATGGTCTCAGTATCTTTCCATCTTGAAGGAGTTGTATCATATTTCTAAGCTCTGTGAAAGAGCTGAAGAAGAATTTTGGGGGGTTTTAAGACGTCAGAAAAGTATGCTGGTTCTACTTATCGTCCAATATGCAAAGAGAACTGATGATCATCAGTGGATTCTGGAGCACAAGGGCATAACAAATTTTGAATCTAGAAGGCATTTGGTGATGATGATGTTCCCAGATGTAAAAGAAGACTATGAGGAGTTGCATGAGATGCTCATTGACCGGTCTCAGCTGTTGGCAGAGTCATTTGAATATATAGCACGGGCAGAGCCTGATTCTCTACATGCTGGTTTGTTTATGGAATTCAAAAATGAGGAAGCTACAGGTCCAGGTGTACTGCGAGAGTGGTTTCTGTTGGTATGCCAAGCATTGTTTAATCCTCAAAATGCTCTTTTTGTGACATGCCCAAATGATCCGAGGAGATTTCTACCCAATCCTGCATCTAAGGTACATCCTCTGCACCTTGATTACTTCACCTTCTCTGGTCGAGTTATCGCGTTAGCTATAATGCATAGGGTGCAAGTGGGCATTGTTTTGGATCGTGTGTTTTTCGTGCAATTGGCAGAAAAACAGGTTACTTTAGAAGATATACGGGATGCTGATCCATATTTGTATAGTAGCTGCAAGCAAATATTGGAGATGGATGCTGATTTCATTGATTCAGATGCTCTAGGACTGACCTTTGTTAGAGAGGTGGAGGAATTAGGATACAGGAAAGTGGTTGAGCTTTGCCCAGGTGGGAAAAGCCTTGTTGTTAATAGTGAGAACAGGGAGAAGTATGTTGATCTTCTTATACAGGATCGTTTTGTAACATCTATATCTGAGCAGGTGTCACATTTTGCCCGTGGTTTTGCTGATATTCTTTGCAACTCAAGACCCCGACAATTCTTTTTTCGAAGTCTAGACCTTGAGGATCTTGATTGGATGCTGCATGGGAGTGAAAGTACCATTTCTGTTGAAGATTGGAAGGCACATACTGAGTACAATGACTATAAAGAGACAGATCCTCAGATAACTTGGTTCTGGGAGATTGTTGGGAAAATGTCAGCTGAGCAAAGGAAGGTTCTTTTGTTTTTTTGGACGTCTCTGAAGTATTTACCTGTGGAAGGCTTCAAAGGTTTGTCTTCTCGTCTCTACATTTACAACTCCATGGAACCCAATGATCACCTCCCTTCATCGCACACATGCTTTTTCCGGCTGTGTTTCCCTCCATATCCATCTTTCTCCGTCATGCAAGATCGTATCCGAATCATCACACAGGAGCACATTGGCTGCAGCTTTGGTACTTGGTGA	2691	0.4199	MSIIEAQTVDCVHQRSGGGADHHRAPSKRKFDDFTAAFSDDGENLGDFRDLVSARMRKDEPKAENSCNFQTFNGSPLDVVGTRIPGTASNACSSRSESSGAWSKLHFFIRLMSEGKTMVLEACPKDTVKSIHERIQAITGIPLFEQRLIYMGKQLQLEQTLVDCAIERDCHLQLVGRMRSTEHPQAWQVINDMVSLIWRLCRGEVRHDALKIIKGLVTEYLKMTTKIDIDAASGYFQIFLSSSAPLVLVMLYMSPYVGNKECADCSIRHFMSSCRSTLSKSLHTKCARVVLEFCKLLRSAGPEDSLYRCCRSTFGSLLETASISYVCEWDKELILIEDIIPFVWEIANRLLRALDLSMESPTSVGPSSSDVQDFAAFLLPLRTRINKPQDFRSLYSLKPNEKLTNLQLFVEEDDIHHIFRKILQKMDQCLNKMQEILTGKKREEGDNLYSAWSQYLSILKELYHISKLCERAEEEFWGVLRRQKSMLVLLIVQYAKRTDDHQWILEHKGITNFESRRHLVMMMFPDVKEDYEELHEMLIDRSQLLAESFEYIARAEPDSLHAGLFMEFKNEEATGPGVLREWFLLVCQALFNPQNALFVTCPNDPRRFLPNPASKVHPLHLDYFTFSGRVIALAIMHRVQVGIVLDRVFFVQLAEKQVTLEDIRDADPYLYSSCKQILEMDADFIDSDALGLTFVREVEELGYRKVVELCPGGKSLVVNSENREKYVDLLIQDRFVTSISEQVSHFARGFADILCNSRPRQFFFRSLDLEDLDWMLHGSESTISVEDWKAHTEYNDYKETDPQITWFWEIVGKMSAEQRKVLLFFWTSLKYLPVEGFKGLSSRLYIYNSMEPNDHLPSSHTCFFRLCFPPYPSFSVMQDRIRIITQEHIGCSFGTW	896

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr5g00392	896	ProSiteProfiles	HECT domain profile.	556	896	IPR000569	GO:0004842
	Accr5g00392	896	ProSiteProfiles	Ubiquitin domain profile.	105	181	IPR000626	GO:0005515
	Accr5g00392	896	PANTHER	HECT DOMAIN UBIQUITIN-PROTEIN LIGASE	106	894	-	-
	Accr5g00392	896	Gene3D	Hect, E3 ligase catalytic domains	536	756	-	-
	Accr5g00392	896	SUPERFAMILY	Ubiquitin-like	107	193	IPR029071	-
	Accr5g00392	896	CDD	HECTc	535	894	IPR000569	GO:0004842
	Accr5g00392	896	SMART	hect_3	554	894	IPR000569	GO:0004842
	Accr5g00392	896	SMART	ubq_7	107	177	IPR000626	GO:0005515
	Accr5g00392	896	PRINTS	Ubiquitin signature	137	157	IPR019956	-
	Accr5g00392	896	PRINTS	Ubiquitin signature	116	136	IPR019956	-
	Accr5g00392	896	PRINTS	Ubiquitin signature	158	179	IPR019956	-
	Accr5g00392	896	Gene3D	-	101	193	-	-
	Accr5g00392	896	FunFam	E3 ubiquitin-protein ligase UPL5	780	895	-	-
	Accr5g00392	896	FunFam	E3 ubiquitin-protein ligase UPL5 isoform A	656	738	-	-
	Accr5g00392	896	Pfam	HECT-domain (ubiquitin-transferase)	585	888	IPR000569	GO:0004842
	Accr5g00392	896	SUPERFAMILY	Hect, E3 ligase catalytic domain	531	882	IPR035983	GO:0004842
	Accr5g00392	896	Gene3D	Hect, E3 ligase catalytic domain	780	895	-	-
	Accr5g00392	896	Gene3D	Hect, E3 ligase catalytic domain	656	738	-	-
	Accr5g00392	896	Pfam	Ubiquitin family	108	179	IPR000626	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr5g00392	Accr-Chr5	20040664	20051579	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr5g00392	105	179	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	40.000	6.90e-11	58.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr5g00392	-		-	gmx:100789233	1268.83