Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00391 ATGGCGATATCTTCGGGAGAGGGACCAAGCAGGAACAACACCTCTGGAAATCGAAAGCGACCTAGGATTACAATTCGCCACAGAAGTAGAGAGTCCGAGGAACTACATATCGTGGAGGCCCAAGGTGAGAGCAGCAACCACGAAGATCGTGAACGCGATGCCAGAGAAGGAAGGGAACGGCAGAATGAAGAGATTGAAGAAGAAGCAGAAGACGCCATCGCCGCCGAAGAAGAAGAATCAGAAGACGTCATCGAAGAGTCATTCTGTGGAGAGAAAGTCAATTCTGGAGGAGATGGTGATGATGGTGGTAGGGATGAGTCCATTCGTGTGACTCTCACCAATCCCAATATTCTTAATTGCTGCATTTGTTGTCAGCCTTTGACTATTCCTGTTTTTCAGTGTGAGAATGGGCATATCGCGTGCTCTACCTGCTGTGTCCAACTTGCCGATAAGTGTTATTCGTGCACGGCGCCCATTGGCAACATCCGTTGCCTGGCCATTGAGAAGGTGTTGGAATCTCTTAAAATATCATGCCGCTATGCAAGACATGGCTGTAAAGAGAAAATTACTCACGTCAACAAAAGAATCCATGAGAAAGATTGCATCTACACCCCATGTTGGTGCCCTATTTATGGTTGCCAGTTCACTGCTCCAAGCAAGAAGTTGTCCCAGCACATCAACAATGAGCATCATGGAAGGTTTATAAACTTCTATTATGATAGCTTCCTGTATCTCACGTTGGGGTTCAACCAGAAAGTCGTTGTTCTTAAAGAGGGAACTGACTCTAATATGTTTATTATAAAAAACGACCTGGAGTATTTGGGGAATACTATCAAAGTCTTTCACATTGGCCCCAAGTCATCGGCTGAGACATATAGGTATGATCTTTATGTTAGATCACAGGGATGCTGTCTGAAACTAGATTCTTTTGTCAATCATACTCTTGGCAACAATTTTCCTGCTACAACAAAGTTCCTTCTGGTTCCAATTGATTTTCTCAGCTGTTTTCCAGAAGTCAATATAGAAATTCGCATATATAAAGTGTATGAATCCAGCAGGCGGGAGTAA 1068 0.4391 MAISSGEGPSRNNTSGNRKRPRITIRHRSRESEELHIVEAQGESSNHEDRERDAREGRERQNEEIEEEAEDAIAAEEEESEDVIEESFCGEKVNSGGDGDDGGRDESIRVTLTNPNILNCCICCQPLTIPVFQCENGHIACSTCCVQLADKCYSCTAPIGNIRCLAIEKVLESLKISCRYARHGCKEKITHVNKRIHEKDCIYTPCWCPIYGCQFTAPSKKLSQHINNEHHGRFINFYYDSFLYLTLGFNQKVVVLKEGTDSNMFIIKNDLEYLGNTIKVFHIGPKSSAETYRYDLYVRSQGCCLKLDSFVNHTLGNNFPATTKFLLVPIDFLSCFPEVNIEIRIYKVYESSRRE 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00391 355 Coils Coil 48 86 - -
Accr5g00391 355 Pfam Seven in absentia protein family 162 312 IPR018121 GO:0005737|GO:0006511|GO:0007275
Accr5g00391 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 55 348 IPR044286 -
Accr5g00391 355 MobiDBLite consensus disorder prediction 63 82 - -
Accr5g00391 355 CDD RING-HC_SIAHs 118 155 - -
Accr5g00391 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 226 IPR013083 -
Accr5g00391 355 MobiDBLite consensus disorder prediction 1 82 - -
Accr5g00391 355 SUPERFAMILY TRAF domain-like 173 336 - -
Accr5g00391 355 ProSiteProfiles Zinc finger SIAH-type profile. 173 231 IPR013010 GO:0008270
Accr5g00391 355 MobiDBLite consensus disorder prediction 1 19 - -
Accr5g00391 355 MobiDBLite consensus disorder prediction 26 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00391 Accr-Chr5 19991330 19994310 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00391 117 230 C3H Transcription Factor Family AT2G41980 37.931 5.03e-22 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00391 K04506 - cave:132183012 251.521