Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00360 ATGGATGGTAATGGAAAAGAGACGGATTTGGAGATAGAGGCTGGTGCGGGAGCGATGATCATGGCGAATGATTATGGGAGACAACAAGACAGGGAAGACAATACATCAGAACCATCCTCAGACCATTTTGTCGTCGTCAAAGAATCGTTTCTCCGAGAGCCTTTACTTCTCAAGAAAAATAGGATGAACAACACTTCGCAGCTCGCTATTGTTGGAGCCAATGTTTGCCCTATTGAAAGTCTTGATTACGAGATCATTGAGAATGATCTATTTAAACAAGATTGGAGGGCCAGAACGAAGGTCGAAATATTTCAATATATCGTTCTTAAATGGGCTCTTGCACTTCTAATTGGTTTGAGCACAGGGCTTGTTGGCTTTTTTAATAACCTTGCTGTTGAGAACATTGCTGGTTTCAAGCTTCTACTCACTAACAGTCTCATGCTCAAAGAAAAGTATTATCAGGCCTTTGCAGCATATGCTGGTTGTAACATGATTTTGGCTGTTGTTGCAGCCATCCTCTGTGCCTACATCGCCCCTGCAGCAGCCGGGTCTGGCATACCTGAGGTGAAGGCCTACCTCAATGGTATAGATGCCCATTCTATATTGGCTCCAAGTACCCTCTTTGTAAAGATCTTTGGTTCAATTTTTGGTGTTGCTGCGGGATTTGTTGTTGGCAAGGAAGGGCCTATGGTACATACTGGTGCTTGCATAGCCAATTTGCTCGGACAAGGTGGTTCTCAAAAGTATCGGCTGACGTGGAAATGGCTCAGATTCTTTAAAAATGATAGAGATCGAAGGGATTTGATCACATGTGGTGCCGCTGCAGGGGTAGCTGCTGCCTTCCGTGCTCCAGTTGGTGGTGTCCTTTTTGCACTTGAAGAAGTAGCTTCATGGTGGAGGAGTGCTCTTCTGTGGCGGACTTTCTTTACAACAGCAGTAGTAGCAGTAGTGCTGAGAAGTTTCATGGATTTGTGTCGGGGTGGAACCTGTGGTCTTTTTGGGGAAGGTGGGTTGATAATGTTCGATGTTAATGAAGCAAACCCTGCGTACAGTGCCCCTGACCTCCTGGCAGTTGTATTTCTTGGTGTCGTTGGAGGCATTTTTGGAAGCCTTTACAATTACCTTGTGGACAAGGTCCTTCGCATCTATAGCATCATAAACGAGAGAGGTCCTATATTTAAAATCTTACTTGTTGCTACAATCTCCCTTTTGACCTCTTGTTGTTCATTTGGCCTTCCATGGCTATCAAAATGCATCCCTTGTCCTCCTAACTTGGGGGACCAGTGCCCCACTGTTGGTCGCTCTGGCCACAACAAGAGTTTCCAATGTCCGCCAAATCATTACAACGACCTTGCTTCTCTCTTTTTCAATACTAATGACGATGCCATCCGCAACCTCTTTGTAGCAGGCACAGACAAGGAGTTTAATCTCTCCACACTTGTGATCTTCTTTATTGCCATATACTTCCTAGGAATCATCACTTATGGAATCGCTGTTCCCTCCGGGCTATTTATTCCTGTCATACTTGCCGGAGCCTCATATGGGCGACTTGCTGGCACTCTTTTAAGTCCATTCACTGTACTCGATGTTGGATTGTTTTCTCTCCTTGGAGCCGCCTCCTTCCTTGGAGGCACCATGAGAATGACTGTTTCTATTTGTGTCATACTCCTTGAACTCACTAATAACCTCCTAATGCTTCCACTGGTGATGCTGGTTCTTCTTGTTTCAAAGACTGTGGCTGATAGCTTCAACAAAGGTGTATATGATCAGATAGTGAAAATGAAGGGGCTGCCTTATATGGAAGCACATGCTGAACCATACATGAGGCATTTAGTTGCAAGTGATGTTGTCTCTGGCCCTCTGATAACTTTTTATGGGATTGAAAAAGTGGGGAATATCATCCATGCCTTAAAGATTACTGGGCACCATGGGTTTCCTGTGATCGACGAGCCTCCTGTCACGGCTGCTCCTGAGTTGTTTGGATTGGTTTTAAGGTCGCATCTGCTTGTACTTCTTAAGAGGAAGAATTTCACAAAGCAGAAGGCGATGACTGGGTCCACCATCATGAGAAACTTCAAGGCACGTGATTTCGCAAAGCCGGGGTTAGGCAAGGGCCTCAAGCTTGAGGATTTGGACATTTCTAAGGAGGAGATGGAGATGTATGTTGATCTCCATCCGATTACTAACACTTCGCCATATACAGTAGTTGAAACAATGTCTCTAGCAAAAGCTGCAGTTCTTTTCCGGGAGCTCGGCCTCAGGCACTTGTTGGTGGTGCCGAAGACACAGGCAAGACCTCCAATTGTTGGGATATTGACAAGGCATGACTTCATGCCTGAGCACATTTTGGGACTATACCCTCATTTGGACCCTCACAAGCAGGGGAAGGAGCAATAA 2397 0.4543 MDGNGKETDLEIEAGAGAMIMANDYGRQQDREDNTSEPSSDHFVVVKESFLREPLLLKKNRMNNTSQLAIVGANVCPIESLDYEIIENDLFKQDWRARTKVEIFQYIVLKWALALLIGLSTGLVGFFNNLAVENIAGFKLLLTNSLMLKEKYYQAFAAYAGCNMILAVVAAILCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSQKYRLTWKWLRFFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEVASWWRSALLWRTFFTTAVVAVVLRSFMDLCRGGTCGLFGEGGLIMFDVNEANPAYSAPDLLAVVFLGVVGGIFGSLYNYLVDKVLRIYSIINERGPIFKILLVATISLLTSCCSFGLPWLSKCIPCPPNLGDQCPTVGRSGHNKSFQCPPNHYNDLASLFFNTNDDAIRNLFVAGTDKEFNLSTLVIFFIAIYFLGIITYGIAVPSGLFIPVILAGASYGRLAGTLLSPFTVLDVGLFSLLGAASFLGGTMRMTVSICVILLELTNNLLMLPLVMLVLLVSKTVADSFNKGVYDQIVKMKGLPYMEAHAEPYMRHLVASDVVSGPLITFYGIEKVGNIIHALKITGHHGFPVIDEPPVTAAPELFGLVLRSHLLVLLKRKNFTKQKAMTGSTIMRNFKARDFAKPGLGKGLKLEDLDISKEEMEMYVDLHPITNTSPYTVVETMSLAKAAVLFRELGLRHLLVVPKTQARPPIVGILTRHDFMPEHILGLYPHLDPHKQGKEQ 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00360 798 CDD CBS_pair_voltage-gated_CLC_euk_bac 613 780 - -
Accr5g00360 798 Pfam Voltage gated chloride channel 167 581 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr5g00360 798 Gene3D Clc chloride channel 102 600 - -
Accr5g00360 798 SUPERFAMILY Clc chloride channel 88 602 IPR014743 -
Accr5g00360 798 FunFam Chloride channel ClC3 102 416 - -
Accr5g00360 798 Pfam CBS domain 729 777 IPR000644 -
Accr5g00360 798 CDD ClC_6_like 79 600 - -
Accr5g00360 798 Gene3D - 601 779 IPR046342 -
Accr5g00360 798 PRINTS Plant CLC chloride channel signature 327 334 IPR002251 GO:0005247|GO:0006821|GO:0016020
Accr5g00360 798 PRINTS Plant CLC chloride channel signature 451 467 IPR002251 GO:0005247|GO:0006821|GO:0016020
Accr5g00360 798 PRINTS Plant CLC chloride channel signature 309 319 IPR002251 GO:0005247|GO:0006821|GO:0016020
Accr5g00360 798 PRINTS Plant CLC chloride channel signature 84 92 IPR002251 GO:0005247|GO:0006821|GO:0016020
Accr5g00360 798 PRINTS Plant CLC chloride channel signature 295 303 IPR002251 GO:0005247|GO:0006821|GO:0016020
Accr5g00360 798 SMART cbs_1 620 673 IPR000644 -
Accr5g00360 798 SMART cbs_1 731 782 IPR000644 -
Accr5g00360 798 ProSiteProfiles CBS domain profile. 727 791 IPR000644 -
Accr5g00360 798 PRINTS Chloride channel signature 587 601 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr5g00360 798 PRINTS Chloride channel signature 531 547 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr5g00360 798 PRINTS Chloride channel signature 274 293 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr5g00360 798 PRINTS Chloride channel signature 499 519 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr5g00360 798 PRINTS Chloride channel signature 179 196 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr5g00360 798 PRINTS Chloride channel signature 549 568 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr5g00360 798 PRINTS Chloride channel signature 210 229 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Accr5g00360 798 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 58 784 - -
Accr5g00360 798 SUPERFAMILY CBS-domain pair 604 778 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00360 Accr-Chr5 18303155 18308477 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00360 51 793 Ion Channels AT5G49890 79.839 0.0 1181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00360 K05016 - cave:132178584 1220.3