Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00351 ATGGAAGAACCATCGAAGGAGGAAGACGGCGAAGAGAAGCCTGCGTGCATTGAAAAGAACGAGGAAGATGAGAAGGCCGCGTTAGCGGTAGGCATGAATCGGAAGGAGAAGAGGAAGGCCATGAAAAAACTGAAGCGGAAACAAATGAGGAAGGAGATAGCAGCGAAGGAGCGCGAGGAAGAGGAGGCTCGGCTCAACGATCCCGAGGAGCTGAAAAGAGCACTTCTGATGGAGCAGGAAGAGGCCGAGAGGGTTGAGCGGGAGAGGAAGCTGTTTGAGGAGAGAGAGAGAGCGTGGATCGAGGCTATGGAGAGGAAGATGAAGGAGGTGGCAGAAGAAGAGCAGAGGAAGCTTCTTGAAGATTCTCATAAGCAACAGCAAGAGAAGGAGACCGAATTGAATGAGGACGATGAATGGGAATATGTGGAGGAAGGGCCTGCAGAAATTATTTGGCAGGGAAACGAGATCATTTTTAAAAAGAAAAAAGTGAGGATTCCCAAGAAGGACTCGAGCCACCAAAATAAGAGGGAGGATGCTGATAAACCTGCATCAAATCCTCTACCTCCCCAATCCGAAGCTTTTGCTGATTACGCAAGTTCATCAGCAGTTTCTGCAAAGCAGGCTCTTGAGAGTGTTGCGCAACAAGTGCCTAATTTTGGAACTGAACAGGATAAAGCTCATTGCCCCTTTCACTTAAAAACGGCAGCATGTCGATTTGGCCAACGTTGTAGCAGAGTCCATTTTTACCCTGATAAATCAAACACACTTCTTATGAAAAACATGTACACTGGTCCAGGCCTTGCTTGGGAGCAAGACGAGGGGCTTGAGTATACAGACGAAGAGGTGGAACGTAGTTTTGAAGAATTCTATGAGGATGTTCACACAGAGTTCTTGAAGTTCGGAGAAATTGTGAACTTTAAGGTATGTAAAAATGGCTCATTTCACTTGCGAGGAAATGTCTATGTGCACTATAAAGCAATGGATTCTGCTGTCCTTGCATATAACTCAATCAATGGTCGTTACTTTGCTGGAAAACAGATTAGGTGTGAATTTGTGAATGTGACTAGATGGAAGGTTGCAATATGTGGGGAGTATATGAAGTCAGGGTTCAAGACTTGCTCCCATGGATCAACTTGCAATTTTATCCACTGTTTTCGTAATCCTGGAGGAGACTATGAATGGGCTGACGCTGACAAACCACCGCCAAAATATTGGGTGAAAAAGATGGCTGCTTTATTTGGTTATTCTGATGAACATGAGAAATTGATGGAGCAAGAAGCTTCAGTGCTGAAGAGCTCAAGCAAGATACAGAAAGCGGAGTCAGACAGGTATCATTCGAGAAGATCAAGATCCAGGAAGATTTGTGATTTCAATAGCGGTGGTTCTGGTAGAAGAAGAAAACGTTATGATGAAAGGCACCGGAGCAGAAGTCGCGATGAGGAAATAGGTGAACAAAATAGCAACTTGAAAGACAACCATAGAGGGAAAGGTAGAACTTCTGATTCTGACAATGATAGGGAATGGATGGATAAGGAAGAAGATAAGGGAAAACACCATACTGGCCATAGAAAAAGTTCAATTAATAGGAACGAAGGTGATGAGAAAAGCCACGAAGGATATTCTGATGTGGATTCAGATGCGGCACCTGGGTATAGTAACAAGCGCCATCAACACCATAGAAAACACTCATATACTAGGAATGATGGTAATGAGAGAAGCCATGAAGGGGATTCTGACGTAGATTCAGATGCGGCACCTGGGTACAGGAAAAAGCACAATCACCACCATAGAAAACACTTGTCTACTAGGAATGAGGGTGATGAGAGGAGAAGCCATGAAGGATATTCTGATGTGGCACCTGGGTACGGTAAAAAGCACCATCACCACCACAGAAAACACTCATCTACTTGGAACGAGGATGACAAGAGAAGAAGCCACGAAGGGTATTCTGATGTAGATTCAGATGCTGTCCATGGGGACAGGAAAAAACGAAACAGTAGTGAAGGAAGGGGCTCAAGAAAAAGGCAGAAAAACAATGATGAGGCTGGATCTGGAGATTGGTCAAGTAGGGACAGAGATAGGAAATGGCATAGCAAAAGCAGAAGCTCTAGACATAGGAGCAGGGACTATGGATATGCAACCAGTGATACTGAATCTGACTCATGTTCGTTTGATAGAGATGGAGACACGGAAACTGAACGTCGTTCTTCTAGGAAAAGATCCAAACACAGAAGATCTGGTTTGCGGGATGATTACGAAGATTATGAGAACGAGAATGAAGTCAACAGAGTGGTCAGTGGAGGAGAAAGACAGACGAGAGAATCTTCATGA 2331 0.4453 MEEPSKEEDGEEKPACIEKNEEDEKAALAVGMNRKEKRKAMKKLKRKQMRKEIAAKEREEEEARLNDPEELKRALLMEQEEAERVERERKLFEERERAWIEAMERKMKEVAEEEQRKLLEDSHKQQQEKETELNEDDEWEYVEEGPAEIIWQGNEIIFKKKKVRIPKKDSSHQNKREDADKPASNPLPPQSEAFADYASSSAVSAKQALESVAQQVPNFGTEQDKAHCPFHLKTAACRFGQRCSRVHFYPDKSNTLLMKNMYTGPGLAWEQDEGLEYTDEEVERSFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVHYKAMDSAVLAYNSINGRYFAGKQIRCEFVNVTRWKVAICGEYMKSGFKTCSHGSTCNFIHCFRNPGGDYEWADADKPPPKYWVKKMAALFGYSDEHEKLMEQEASVLKSSSKIQKAESDRYHSRRSRSRKICDFNSGGSGRRRKRYDERHRSRSRDEEIGEQNSNLKDNHRGKGRTSDSDNDREWMDKEEDKGKHHTGHRKSSINRNEGDEKSHEGYSDVDSDAAPGYSNKRHQHHRKHSYTRNDGNERSHEGDSDVDSDAAPGYRKKHNHHHRKHLSTRNEGDERRSHEGYSDVAPGYGKKHHHHHRKHSSTWNEDDKRRSHEGYSDVDSDAVHGDRKKRNSSEGRGSRKRQKNNDEAGSGDWSSRDRDRKWHSKSRSSRHRSRDYGYATSDTESDSCSFDRDGDTETERRSSRKRSKHRRSGLRDDYEDYENENEVNRVVSGGERQTRESS 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00351 776 Coils Coil 32 66 - -
Accr5g00351 776 MobiDBLite consensus disorder prediction 50 67 - -
Accr5g00351 776 SMART c3hfinal6 223 249 IPR000571 GO:0046872
Accr5g00351 776 SMART c3hfinal6 356 385 IPR000571 GO:0046872
Accr5g00351 776 MobiDBLite consensus disorder prediction 746 760 - -
Accr5g00351 776 PRINTS U2 auxiliary factor small subunit signature 283 298 IPR009145 GO:0000398|GO:0003723|GO:0089701
Accr5g00351 776 PRINTS U2 auxiliary factor small subunit signature 338 362 IPR009145 GO:0000398|GO:0003723|GO:0089701
Accr5g00351 776 PRINTS U2 auxiliary factor small subunit signature 228 247 IPR009145 GO:0000398|GO:0003723|GO:0089701
Accr5g00351 776 PRINTS U2 auxiliary factor small subunit signature 247 267 IPR009145 GO:0000398|GO:0003723|GO:0089701
Accr5g00351 776 PRINTS U2 auxiliary factor small subunit signature 311 333 IPR009145 GO:0000398|GO:0003723|GO:0089701
Accr5g00351 776 PRINTS U2 auxiliary factor small subunit signature 376 388 IPR009145 GO:0000398|GO:0003723|GO:0089701
Accr5g00351 776 ProSiteProfiles Zinc finger C3H1-type profile. 222 250 IPR000571 GO:0046872
Accr5g00351 776 MobiDBLite consensus disorder prediction 110 138 - -
Accr5g00351 776 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 357 384 IPR000571 GO:0046872
Accr5g00351 776 ProSiteProfiles Zinc finger C3H1-type profile. 356 386 IPR000571 GO:0046872
Accr5g00351 776 Coils Coil 100 136 - -
Accr5g00351 776 MobiDBLite consensus disorder prediction 720 736 - -
Accr5g00351 776 MobiDBLite consensus disorder prediction 1 67 - -
Accr5g00351 776 MobiDBLite consensus disorder prediction 473 542 - -
Accr5g00351 776 MobiDBLite consensus disorder prediction 164 199 - -
Accr5g00351 776 FunFam Zinc finger CCCH domain-containing protein 5 255 352 - -
Accr5g00351 776 MobiDBLite consensus disorder prediction 634 696 - -
Accr5g00351 776 MobiDBLite consensus disorder prediction 110 131 - -
Accr5g00351 776 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 210 597 IPR009145 GO:0000398|GO:0003723|GO:0089701
Accr5g00351 776 MobiDBLite consensus disorder prediction 600 622 - -
Accr5g00351 776 MobiDBLite consensus disorder prediction 564 588 - -
Accr5g00351 776 Coils Coil 75 97 - -
Accr5g00351 776 MobiDBLite consensus disorder prediction 429 776 - -
Accr5g00351 776 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 354 IPR000504 GO:0003723
Accr5g00351 776 MobiDBLite consensus disorder prediction 8 35 - -
Accr5g00351 776 SUPERFAMILY RNA-binding domain, RBD 286 355 IPR035979 GO:0003676
Accr5g00351 776 Gene3D - 253 352 IPR012677 -
Accr5g00351 776 Coils Coil 738 758 - -
Accr5g00351 776 SMART rrm2_1 278 350 IPR003954 GO:0003676
Accr5g00351 776 MobiDBLite consensus disorder prediction 436 466 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr5g00351 zf-CCCH 4e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00351 K24273 - cave:132177828 662.914