Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00339 ATGGATGCTCACCGAGACCCTCTGGTGCAAATCAACGACTTCCAGCTTCATGACTTCATCGACGACACCAATTTCGATCAGTTCATCAATTTGCTCCGCGGGGAGAGTGAACACTCATTCTGTAACTTTGATTCTGATCTTATCAATGTTTGCTTAGCTGATACCCAGTTTCTTCCATTATCTGCAAACCCGTTTCAGTCTAATAATGCTGCTGTGAATGCTTATGATCCAACCTCTACGCTTAGTTCCTTCTCATGTTTTGATGGAGAACTGAAGGGAGGAAGAGGAGGAGAAGAGAATGATTCTTCCACTGCGACAACAAGCACCACCACTGAAACCACAACGCGTGATAACACCAAGCACAAGTCCAAAACTGATAGGTCCAAGACTCTGATTTCTGAAAGGAGGAGGAGAGGCCGAATGAAGGAGAAGCTTTATGCATTGCGTGCTTCGGTTCCCAACATATCTAAGATGGATAAGGCCTCCATCGTGGGCGATGCTGTAGCATATGTGCAGGAGCTGCAAGAGAGGGCTAAGAAGCTTAAGGCTGAGATCGAAGGTCTTGAAGCATCTCTGCTAGCGCCCGAAAACGATCATCAATCAGCTAAAATCTCCATGAAGGTTCAAAACAACAAAATCAACTATCCAATCTGCAAGAAGATCATGCAGATGGACATGGTTCAGGTGGAGGAAACAGGGTTTTATGTGAAATTGGTGTGTGATAAAGGAGAAGGAGTGGCTACCTACCTGTACAGGGCTCTCGAGTCCCTAGCAGGCTTCAATGTTCAGAATTCAAACTTGGCCACAGTTTCTGACAGATTTCTATTAACATTTACATTGAATGTGAAGGGTTACGAGATAGAAATAAACCAACAAAATCTGAAGCTGTGGGTGGCAGGCGCTCTTCTAAATCAAGGCTTCGAATTTACTACAACTTTCCATGCTTGA 948 0.4441 MDAHRDPLVQINDFQLHDFIDDTNFDQFINLLRGESEHSFCNFDSDLINVCLADTQFLPLSANPFQSNNAAVNAYDPTSTLSSFSCFDGELKGGRGGEENDSSTATTSTTTETTTRDNTKHKSKTDRSKTLISERRRRGRMKEKLYALRASVPNISKMDKASIVGDAVAYVQELQERAKKLKAEIEGLEASLLAPENDHQSAKISMKVQNNKINYPICKKIMQMDMVQVEETGFYVKLVCDKGEGVATYLYRALESLAGFNVQNSNLATVSDRFLLTFTLNVKGYEIEINQQNLKLWVAGALLNQGFEFTTTFHA 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00339 315 SMART finulus 131 180 IPR011598 GO:0046983
Accr5g00339 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 190 IPR036638 GO:0046983
Accr5g00339 315 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 13 305 - -
Accr5g00339 315 MobiDBLite consensus disorder prediction 99 114 - -
Accr5g00339 315 Pfam Helix-loop-helix DNA-binding domain 132 175 IPR011598 GO:0046983
Accr5g00339 315 MobiDBLite consensus disorder prediction 92 136 - -
Accr5g00339 315 Gene3D - 115 191 IPR036638 GO:0046983
Accr5g00339 315 Coils Coil 164 191 - -
Accr5g00339 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Accr5g00339 315 MobiDBLite consensus disorder prediction 115 136 - -
Accr5g00339 315 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 121 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00339 Accr-Chr5 17574209 17575992 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00339 1 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 50.633 6.88e-97 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr5g00339 HLH 5.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00339 K26214 - gmx:100805451 385.956