Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00333 ATGGAACTTTCTAGTGAAGACGGAGAGATCCCAATCCCAATAAACAGTGCCACTAGTTTTGGAGGAGGTGGTAATAATGGCCATGGCCACTTGATCCACCACCATCATCATGAGCCTGCGATCCACAGCCACATGATCTCTAATTCCTCAATACTACCAGTAGCATCAGTGCCGGCCCATAACGGTGTTGGAGGCGGTGGCTGTGGTGACAGCATGGAGGAGGATGATGCTCAGCAGCATGGGCCCCACAGCAAGAAACTAGTGGTGAAATACAGAGAATGCTTGAAGAACCATGCAGCTTCCATGGGAGGAAATGCCACAGATGGTTGTGGCGAGTTCATGCCCAGTGGGGAAGAAGGAACACTTGAAGCCCTCACTTGTTCAGCCTGTCATTGCCACAGAAACTTCCACAGAAAAGAAGTTGAAGGCCAAGGCCATAATGATCAATATCAACAAGATCATCATCTTCTTCATCATCATCATCACCAATATCTTCATCATCTTCATAACACTACTAATCATCCTTACAGGTTAGGTGGTAGGAAGCTCCTTCTTCCTCCTCCTCCGCCTGAAACCCTGGGCTACCCTACACCACCACCACCACCACCACCACCAGGTAACGTCTTACCTTCTAGAATGATCATGCCCTACAATGTCATTGGGTCCCACCACTCATCCCTCCCTTCAGACTTATCTGATGAGCAAGATGATCCTCATCATCATCATGGCATAATGAGGCCACATCAAAATAAGAAGAGGTTCAGGACAAAGTTCACACAGGAGCAGAAGGAGAAGATGCTGAGTTTTGCTGAGAGAGTTGGGTGGAAGATTCAGAAGCAAGAAGAGTCTGTGGTTCAACAGTTTTGTCAAGAGATTGGTGTGAAGAGAAGAGTTCTTAAGGTTTGGATGCACAACAATAAGCACAACCTTGCCAAAAAGATGAATCCCGCTGCAGAAGCGGCTACTACTGCTGCTACTACTTCACCACCTTAA 993 0.4723 MELSSEDGEIPIPINSATSFGGGGNNGHGHLIHHHHHEPAIHSHMISNSSILPVASVPAHNGVGGGGCGDSMEEDDAQQHGPHSKKLVVKYRECLKNHAASMGGNATDGCGEFMPSGEEGTLEALTCSACHCHRNFHRKEVEGQGHNDQYQQDHHLLHHHHHQYLHHLHNTTNHPYRLGGRKLLLPPPPPETLGYPTPPPPPPPPGNVLPSRMIMPYNVIGSHHSSLPSDLSDEQDDPHHHHGIMRPHQNKKRFRTKFTQEQKEKMLSFAERVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKMNPAAEAATTAATTSPP 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00333 330 NCBIfam homeobox domain, ZF-HD class 251 307 IPR006455 -
Accr5g00333 330 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 90 141 IPR006456 -
Accr5g00333 330 Pfam ZF-HD protein dimerisation region 89 141 IPR006456 -
Accr5g00333 330 FunFam Zinc-finger homeodomain protein 2 239 312 - -
Accr5g00333 330 MobiDBLite consensus disorder prediction 222 252 - -
Accr5g00333 330 Gene3D - 239 313 - -
Accr5g00333 330 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 91 140 IPR006456 -
Accr5g00333 330 MobiDBLite consensus disorder prediction 185 205 - -
Accr5g00333 330 MobiDBLite consensus disorder prediction 229 243 - -
Accr5g00333 330 SUPERFAMILY Homeodomain-like 241 312 IPR009057 -
Accr5g00333 330 MobiDBLite consensus disorder prediction 1 30 - -
Accr5g00333 330 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 78 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00333 Accr-Chr5 17191621 17192613 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00333 1 325 ZF-HD Transcription Factor Family AT2G02540 45.000 3.07e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Accr5g00333 ZF-HD_dimer 4.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00333 - - pcin:129306662 402.134