Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00310 ATGGCAATTGTAGCAACCTCATCCTCATCTCCCACTATGAGCCTCAGCCACGATGACACCACCACAACCGCCGCCACCAATGGCTGCAGCACCCTCAACAGCCCTGATGAAGATGACAACGACAAGGACAACCACCAGCACGACATGGTCATGCCCGGCTTCCGCTTCCACCCAACAGAAGAAGAACTGATTGACTTCTACCTTCGCCGGAAAGTAGAAGGCAAGCGTTTCAATGTTGAGCTCATCACCTTCCTCGATCTCTACCGCTACGACCCATGGGAACTTCCTGCTATGGCGGCCATCGGAGAGAAAGAGTGGTACTTCTATGTTCCAAGAGATAGGAAGTACCGGAACGGTGATCGGCCGAACAGAGTGACGACGTCAGGGTATTGGAAAGCGACCGGAGCTGATAGAATGATTCGAGCGGTGGAGAGTTCAAGGTCAATCGGGTTGAAGAAAACCCTAGTTTTCTATTCAGGCAAAGCTCCAAAAGGAATTAGAACCAGTTGGATTATGAACGAGTATCGCTTGCCTCACCATGAAACCCAACGCTTCCAAAAGGCTGAGATATCTCTGTGTAGAGTATACAAGAGACCTGGTGTAGAAGATCATCACTCTCTTCCTCGCAATCAACAAACAAGACTGTCTTCTTCATCAAGACCACCTTCTTCAGATAAGAATCATTATACTAAGAACAACATCAACCTTGTTCCAGACATGTTTCATCACTATCATCATCAAAACATGGGATTTCTCGAACAACCTCAGAATCATCATCCAGATCAGCAAATCACCAACGAAACCGATCGGGGAAGCAGTAGCAGTACAGCTGCAACTACTACCACCACTAACAACAATAATAATACAATATTAATGATGGATGATATGAATAGGCTAGTGACCTATAATAATAATAATAACCAACAATATTTGCAGTACTATAACACTGGTATTATTGACCTTCCTCCTCCTACTGGAAATCATCATCTTCTTCCTCATCATCATCATCATCTTCAGTTCTCTAATCTGTTATTGCAGCAGCAGCAGCCACAAGTTCATCAACAACCAATGGTGGCTCTGAATAGTTCGCTTCCTATTACCTCTTTCTCTGACAGATTGTGGGAGTGGAATCCTTTGACCCCAGAAGCTACCAACCGAGAGTTCAGCAACATGTCCTTCAAGTAA 1185 0.4506 MAIVATSSSSPTMSLSHDDTTTTAATNGCSTLNSPDEDDNDKDNHQHDMVMPGFRFHPTEEELIDFYLRRKVEGKRFNVELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRAVESSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPHHETQRFQKAEISLCRVYKRPGVEDHHSLPRNQQTRLSSSSRPPSSDKNHYTKNNINLVPDMFHHYHHQNMGFLEQPQNHHPDQQITNETDRGSSSSTAATTTTTNNNNNTILMMDDMNRLVTYNNNNNQQYLQYYNTGIIDLPPPTGNHHLLPHHHHHLQFSNLLLQQQQPQVHQQPMVALNSSLPITSFSDRLWEWNPLTPEATNREFSNMSFK 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00310 394 MobiDBLite consensus disorder prediction 252 289 - -
Accr5g00310 394 ProSiteProfiles NAC domain profile. 50 198 IPR003441 GO:0003677|GO:0006355
Accr5g00310 394 MobiDBLite consensus disorder prediction 1 34 - -
Accr5g00310 394 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 48 278 - -
Accr5g00310 394 FunFam NAC domain-containing protein 35 59 201 - -
Accr5g00310 394 SUPERFAMILY NAC domain 50 198 IPR036093 GO:0003677|GO:0006355
Accr5g00310 394 Gene3D NAC domain 59 201 IPR036093 GO:0003677|GO:0006355
Accr5g00310 394 MobiDBLite consensus disorder prediction 210 232 - -
Accr5g00310 394 MobiDBLite consensus disorder prediction 1 46 - -
Accr5g00310 394 Pfam No apical meristem (NAM) protein 52 177 IPR003441 GO:0003677|GO:0006355
Accr5g00310 394 MobiDBLite consensus disorder prediction 201 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00310 Accr-Chr5 15968860 15971231 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00310 49 214 NAC Transcription Factor Family AT2G02450 91.566 5.19e-112 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr5g00310 NAM 7.5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00310 - - pcin:129305223 545.428