Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00306 ATGCCTCTCTCCGTCAACATTGGCTTTGGCTACTCCATTGTCATCGCCCTCGCTTTTCTGGTTCTCGCCTCACTGCTCATTCTCTCTTTCTACCTCTGCTGCCGCAAGCGTAACCGAAACCCCAGTTCGGATTCGTACCCGAATCCGAATATGAACCCATCTGGGTCGAATGTGGGATCCGAGGGTATTGTTCTGCCTCGGGTGATTTTTGTGGCGGAGGAGGAGGAGGAGGATGACAACGAGAGCGCCGTCGTGGGGCTTGACGACAACGTTATAAACTCGTACCCGAGGTTTCAGTACAGTAGGGGAGCTATGGGCGTCGGAAGCAGTACGATGTGTTCGATCTGTTTGTGTGAGTTTAGAGATTCGGAGATGCTGAGGATGATGCCGGAGTGTCGCCATTATTTCCACCTCTTGTGCCTTGACTCTTGGCTTAAGCTTAATGGGTCTTGCCCTGTTTGCCGGAACTCGCCGCTCATGACGCCGATTGCTACGCCTCTGCAAGAAGTTGTGCCGCTCTCTCAGTACCCGGCCGATAGGCGGCGACGGAGGTGA 555 0.5423 MPLSVNIGFGYSIVIALAFLVLASLLILSFYLCCRKRNRNPSSDSYPNPNMNPSGSNVGSEGIVLPRVIFVAEEEEEDDNESAVVGLDDNVINSYPRFQYSRGAMGVGSSTMCSICLCEFRDSEMLRMMPECRHYFHLLCLDSWLKLNGSCPVCRNSPLMTPIATPLQEVVPLSQYPADRRRRR 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00306 184 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Accr5g00306 184 Pfam Ring finger domain 112 155 IPR001841 -
Accr5g00306 184 SMART ring_2 113 154 IPR001841 -
Accr5g00306 184 SUPERFAMILY RING/U-box 112 160 - -
Accr5g00306 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 159 IPR013083 -
Accr5g00306 184 PANTHER RING-H2 FINGER PROTEIN ATL67 5 183 IPR044289 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00306 Accr-Chr5 15740134 15740688 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00306 86 181 C3H Transcription Factor Family AT2G35910 51.042 2.46e-31 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00306 - - qlo:115983169 241.121