Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00275 ATGCAGAGTCAGCTTGTGTGTAATGGGTGCCGGAGTGTTTTGCATTACCCTAGGGGGGCCACTAATGTTTGTTGTGCATTGTGCAACACAATTACCTCTGTTCCTCCTCGTGGGATGGAAATGTCTCAACTTTATTGTGGAGGATGTAGGACATTGCTGATGTACACACGTGGAGCTACAAGTGTTAGATGTTCCTGCTGTCATACCTTGAACCTTGCATCGAGTGCACTAGCATCTAGCCACTTTGCCCATATACACTGTGGGAACTGCCGGACAACTCTGATGTATCCATATGGAGCTCCATCAGTCAAATGTGCGTTGTGTCAGTATATAACAGATACCAGCAGGACCAATGGAAGGGTTCCCAATGCCATCCACAGTCCAAATGGGACAACCAACTCTGGAACAATACCTTCTACTTCAACATCAATGCCCTATTCTCAAGGTCAAACGGTTGTGGTAGAAAATCCCATGTCTGTTGATGCAAGTGGGAAATTGGTGAGCAATGTTGTTGTTGGCGTAACAACTGAGAAGAAGTAA 540 0.4574 MQSQLVCNGCRSVLHYPRGATNVCCALCNTITSVPPRGMEMSQLYCGGCRTLLMYTRGATSVRCSCCHTLNLASSALASSHFAHIHCGNCRTTLMYPYGAPSVKCALCQYITDTSRTNGRVPNAIHSPNGTTNSGTIPSTSTSMPYSQGQTVVVENPMSVDASGKLVSNVVVGVTTEKK 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00275 179 MobiDBLite consensus disorder prediction 119 146 - -
Accr5g00275 179 NCBIfam zinc finger domain, LSD1 subclass 84 112 IPR005735 -
Accr5g00275 179 NCBIfam zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Accr5g00275 179 NCBIfam zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Accr5g00275 179 Pfam LSD1 zinc finger 7 31 IPR005735 -
Accr5g00275 179 Pfam LSD1 zinc finger 46 69 IPR005735 -
Accr5g00275 179 Pfam LSD1 zinc finger 87 111 IPR005735 -
Accr5g00275 179 PANTHER PROTEIN LSD1 2 178 IPR040319 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Accr5g00275 zf-LSD1 5.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00275 - - gmx:100776394 313.538