Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00227 ATGAGACTATCTTCATCTAGTTTTAGCCCTCCACCTCCTGAAGGAGAAAAGCGAGTCCTGGATTCAGAACTTTGGCATGCATGTGCTGGCCCTCTTGTTTCCTTACCAGCAGTTGGAAGTCGTGTCGTCTACTTTCCTCAAGGTCACAGTGAACAGGTTGCTGCGTCTACCAACAAGGAAGTGGATGCCCATATTCCTAATTACCCTAGCTTGCCTCCGCAGCTTATTTGTCAGCTTCATAATGTGACCATGCATGCGGATGCGGAGACAGATGAAGTATACGCGCAGATGACCTTGCAAGCTCTAAATCCTCAAGAGCATAAAGATGCGTACCTTCCAGCAGAGTTGGGCACTCCTAGTAAGCAGCCAACAAATTACTTTTGCAAAACTTTGACAGCCAGTGACACAAGCACACATGGGGGGTTCTCTGTTCCCCGCCGAGCAGCTGAGAAAGTGTTTCCCCCACTGGACTTCTCCCAACAACCTCCTTGTCAAGAGCTAATTGCTAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTTCGTGGTCAACCCAAACGGCATCTACTTACAACAGGATGGAGTGTGTTTGTGAGTGCTAAGAGGCTTGTTGCTGGTGATTCAGTTCTGTTTATCTGGAATGAAAAGAATCAGTTGCTTCTCGGTATCCGGCGTACAAATCGTCCACAAACTGTGATGCCTTCGTTAGTGTTATCAAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCTGCTCATGCTGCTGCAACAAACAGTCGATTCACCATTTTCTACAATCCACGCGCTAGCCCATCTGAATTTGTCATACCCTTAGTCAAGTATGTGAAAGCAGTGTATCATACTCGAGTCTCAGTTGGTATGCGCTTCAGGATGCTGTTTGAAACTGAGGAATCAAGCGTGCGGAGATACATGGGAACCATAACTGGTATCAGTGACCTGGATCCTGTTCGATGGCCAAATTCACATTGGCGATCAGTCAAGGTTGGCTGGGATGAATCTACAGCAGGAGAGAGGCAACCTAGGGTGTCCCTATGGGAAATTGAGCCATTAACAACATTTCCGATGTATCCATCATCTTTTCCTCTTAGGCTTAAACGACCGTGGCCTCCGGGATTGCCTTCTTTCCAGGGTATGAAGGATGACAGTTTTAGCTTAAGTAATCAACTGTTTTGGCTTCGAGACACCTCAGACCGAGGTCTCCAGTCTCCTAACTTCCAGGGGTTTGGGTTCAATCCCTGGATGCAGGCAGGGCTTGATCCCTCCATGTTGACTTCACCAACTGACATGTACCAAGCCATGGCTAATACTGCAGTTCACGATATGAGGACTTTGGATACTTCCAAGCCGCATCCGGCATCTTTTCTTCAATTTCAGCAGCAACTGAACTTCCCCAATAGGACTGCTGCTTTAATGCAGGCCCAAATGTCCCAGCAGTCTCAACTGCAGCAGGCTTGTCAAAGCAATCAAGAGAATCAGAATTCTTCTCAATCCTTGGCTCCAACTCAGATGCAACTTCAGCAGCAGCACTCGTTCAATAATAATCAGCATCAGCAGCCGCAGCAAGTGGTTGATCATCAGCAGATTTCAAGTGCTTCTGCAATGTCTCAGTTTGCATCTCCTCCACAACCCCATTCACCATCCATGCAAGCTATGTCTTCGCTTTGCCAACAACAGAACTTTTCTGAAACAAATGTGAATTCAATGAATGCGTCCATGGTTTCTCCCTTGCACAGTATCTTGGGTTCGTTTTCCCAGGATGAATCATCCCACCTTCTCAACGTACCCAGGATTAGTTCTTGGGTACCTGTTCAAACATCTAGCGCCTGGCCCTCCAAGCGTGTTGCAGTCGATCCTCTACTTTCTTCTGGAGCTTCTCAGTGCACTCTGCCTCAATTGGAGTTGTTAGGGCAGCCACAAAGTACTATGTCACAGAATGTTATTTCGTTGCCACCTTTTCCTGGTCGGGATTGTTCAATAGACCAAGATGGGAGCACCGATCCTCAGAACAATCTTTTATTTGGTGTTAATATAGAGCCCTCATCTCTTATAGTGCAGAATGGGATGCCGAGCCTTAAGGGAGTTGGCAACAACAACGACTCTGGGATTGCGCCTTTTCAGTCATCTAATTACCTGGATGCTACAGGAACTGATTCATCATTGAATCATGGAATTACACACAGCATTGCTGAATCGAGCGTCCTTGAGATTCCAGATAATGGAGGTCAAGGAGACGCACAAAACAAAACCTTTGTCAAGGTTTACAAGTCAGGGTCCTGCGGAAGATCATTGGATATCACTAAATTCAGCAGCTACCATGAGCTGCGTAGTGAACTTGCCCGAATGTTTGGCCTCGAAGGCAAGTTAGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGAATGACGTTCTTCTCCTCGGTGATGGCCCCTGGCCGGAATTCGTAAATAGTGTATGGTGTATCAGAATACTTTCTCCCCAAGAAGTGCAGCAAATGGGCAACAAAGGGCTCGAGCTTCTGAACTCAGTCCCAATTCAGAGGCTCTCTAATGGTGTCTGTGATGACTACGCGAGCCGCCCTGACCCAAGAAACTTAAGCACTGGGATAGCAACCAATGGTGTGACAATCTAG 2670 0.4712 MRLSSSSFSPPPPEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHADAETDEVYAQMTLQALNPQEHKDAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPCQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRTNRPQTVMPSLVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLVKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSSFPLRLKRPWPPGLPSFQGMKDDSFSLSNQLFWLRDTSDRGLQSPNFQGFGFNPWMQAGLDPSMLTSPTDMYQAMANTAVHDMRTLDTSKPHPASFLQFQQQLNFPNRTAALMQAQMSQQSQLQQACQSNQENQNSSQSLAPTQMQLQQQHSFNNNQHQQPQQVVDHQQISSASAMSQFASPPQPHSPSMQAMSSLCQQQNFSETNVNSMNASMVSPLHSILGSFSQDESSHLLNVPRISSWVPVQTSSAWPSKRVAVDPLLSSGASQCTLPQLELLGQPQSTMSQNVISLPPFPGRDCSIDQDGSTDPQNNLLFGVNIEPSSLIVQNGMPSLKGVGNNNDSGIAPFQSSNYLDATGTDSSLNHGITHSIAESSVLEIPDNGGQGDAQNKTFVKVYKSGSCGRSLDITKFSSYHELRSELARMFGLEGKLEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIRILSPQEVQQMGNKGLELLNSVPIQRLSNGVCDDYASRPDPRNLSTGIATNGVTI 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00227 889 FunFam Auxin response factor 752 846 - -
Accr5g00227 889 ProSiteProfiles PB1 domain profile. 757 841 IPR000270 GO:0005515
Accr5g00227 889 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 846 IPR044835 GO:0003677|GO:0006355|GO:0009725
Accr5g00227 889 SUPERFAMILY CAD & PB1 domains 755 834 - -
Accr5g00227 889 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Accr5g00227 889 FunFam Auxin response factor 125 229 - -
Accr5g00227 889 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Accr5g00227 889 Pfam AUX/IAA family 752 843 IPR033389 -
Accr5g00227 889 Gene3D - 291 363 - -
Accr5g00227 889 MobiDBLite consensus disorder prediction 490 563 - -
Accr5g00227 889 FunFam Auxin response factor 291 363 - -
Accr5g00227 889 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Accr5g00227 889 Gene3D - 752 846 - -
Accr5g00227 889 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Accr5g00227 889 Gene3D - 125 228 IPR015300 -
Accr5g00227 889 CDD B3_DNA 126 227 IPR003340 GO:0003677
Accr5g00227 889 SMART B3_2 127 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00227 Accr-Chr5 10603212 10608912 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00227 757 849 B3 DNA Binding Superfamily AT1G19220 61.290 6.14e-31 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Accr5g00227 AUX_IAA 6.5e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00227 - - gmx:100798719 1402.5