Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00202 ATGGCAATACCTTCAGGAGAGGGACCAAGCAGGAACAACACTTCCCGAATTCAAATGCGACAAAGTATTACAATTCCCTACAGAAGCAGAGAGTCCGAGGAACAACATGTCGTAGAGGCACAAGGTGAAAGCGACGCCGGAGAAGGAAGGGAAGTCACTTCTGGAGGAGGCGGTGGTGCTGGTAGGGATGGGTCAATTCCTGTGACCCTCGCCGATCCTGATATTCTCGATTGCATCATTTGCTATCAGCCTTTGACTATTCCTGTATTTCAGTGTGAGAATGGACATATTGCATGCTCTACCTGCTGTGTCCGAATTGCCCATAAGTGTTATTTATGCCGGGAGCCCATCGGCCACATCCGTTGCCTAGCCATAGAGAAGGTTATAGAGTCCATTAAATTTTCATGCCGCTATGCAAGACATGGCTGTATAGAGAAAATTACTCACTTCAACAGAAGTATCCATGAGAAAGGTTGCATCTACACGCCATGTTGGTGCCCTATTGATGGTTGCCAGTTCACTGCTCCAAGCAAGAAGTTGTCCGAGCACATCCACCATGAGCATCACGGAAGCTTTATAAACTTTCATTATGATAGCTTCCTCGATCTCAAGTTGGGGCTCAACCAGAAAGTCGTTGTTCTTAAAGAGCTAACTGACTCTAATTTATTTATCATAACAAACGGTCAGGAGCATATGGGCAATGTGTTCAATGTCTTTCATATTGGCCCCAAGTCATCGGCTGCGATGTATGAGTATGAACTTTATGCTAGAACACAGGGATGCTGTCTGAAACTGGAATCTTTTGTCAATCACACCCTTGGCAACAATTTTCATGGTACAAGAAAGTTCCTTCTGGTTCCAACTGATTTTTTCGGTCCGTCTCCAGCAGTCAAGATAGAAATTCGCATATACAAAACGTATGAATCCAGTAGGTGCGAGTAA 942 0.448 MAIPSGEGPSRNNTSRIQMRQSITIPYRSRESEEQHVVEAQGESDAGEGREVTSGGGGGAGRDGSIPVTLADPDILDCIICYQPLTIPVFQCENGHIACSTCCVRIAHKCYLCREPIGHIRCLAIEKVIESIKFSCRYARHGCIEKITHFNRSIHEKGCIYTPCWCPIDGCQFTAPSKKLSEHIHHEHHGSFINFHYDSFLDLKLGLNQKVVVLKELTDSNLFIITNGQEHMGNVFNVFHIGPKSSAAMYEYELYARTQGCCLKLESFVNHTLGNNFHGTRKFLLVPTDFFGPSPAVKIEIRIYKTYESSRCE 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00202 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 184 IPR013083 -
Accr5g00202 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 28 305 IPR044286 -
Accr5g00202 313 MobiDBLite consensus disorder prediction 7 26 - -
Accr5g00202 313 MobiDBLite consensus disorder prediction 27 46 - -
Accr5g00202 313 CDD RING-HC_SIAHs 76 114 - -
Accr5g00202 313 MobiDBLite consensus disorder prediction 1 64 - -
Accr5g00202 313 Pfam Seven in absentia protein family 120 266 IPR018121 GO:0005737|GO:0006511|GO:0007275
Accr5g00202 313 ProSiteProfiles Zinc finger SIAH-type profile. 131 189 IPR013010 GO:0008270
Accr5g00202 313 SUPERFAMILY TRAF domain-like 131 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00202 Accr-Chr5 7785189 7786701 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00202 59 188 C3H Transcription Factor Family AT2G41980 34.848 2.99e-22 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00202 K04506 - gmx:100797881 268.085