Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00201 ATGGCGAGATCTCCAGGAGAGGGACCAAGCAGGAACAACAACTCTCCAATTCGAAAGCGACCTAGGATTACAGTTCGCCACAGAAATAGAGAGTCTGAGGAAAGACATGTCGTAGAGGCACAAGGCGGTGGGTGCACCAACCACGAAGATCGTGAAAGCAACACGGGAGAAGAAAGAGAACGGCAAAATGAAGAGCCTAGAGAAGACGCTGAAGAAGCAGAAGATGCCAACGCGGAAGAAGAAGCAGAAGATGCCAACGCGGAAGAAGAAGCAGAAGATGCCGACGCGGAAGAAGAAGCAGTAGCCGTCCAAGTAGAAGAAGAAGAATCAGAAGAGGTCTACGAACTGGTTGACGTCGAAGAGGAAGTCGCTTCTGGGGGAGACGATGGTGGTGGTAGAGATGGGTCAATTTCTGTGACTCTGACCGATCCAGATATTCTCAATTGCTGCATTTGCTGTGAGCCTTTGGCTACTCCTGTTTATCAGTGTAAGAATGGACATATTGCATGCTCTACCTGCTGGGTCCGAATTGCCCATAAGTGTTATTCATGCCGGAAGCCCATCAGCCACATCCGTTGCCGAGCCATAGAGAAGGTTATAGAGTCCATTAAATTTTCATGCCGCTATGCAAGACATGGCTGTATAGAGAAAATTAGTCACTTCAACAAAAGTATCCATGAGAAAGATTGCATCTACACGCCATGTTGGTGCCCTATTGATGGTTGCCAGTTCACTGCTCCAAGCAAGAAGTTGTCCCAGCACATCAACCAAAAGCATCACGGAAGCGTTGTAAACTTTCATTATGATAGCTTACTCCATCTCAAGCTGGGGCTCAACCAGAAAATCATTGTTCTTAAAGAGCTAACTGACTCTAATTTATTTGTTATAAGAAACGGTCAGGAGCAGCATATGGGCAATTTGTTCAATGTCTTTCATATTGGCCCCGAGTCATCGGCTGAGATGTATGAGTACGAACTTTTTGCTAGATCACAGGGATGCTGTCTGCAACTGGAATCTTTTGTCAATCACACCCTTGGAAACAATTTTCCTGCAACAACAAAGTTCCTTCTGGTACCAACTGATTTTCTCGGTCCTTCTCCAGCACTCAAGATAGAAATTCGCATATATAAAGTGCATGAATCCAGTAGGTGCGGGTAA 1158 0.4577 MARSPGEGPSRNNNSPIRKRPRITVRHRNRESEERHVVEAQGGGCTNHEDRESNTGEERERQNEEPREDAEEAEDANAEEEAEDANAEEEAEDADAEEEAVAVQVEEEESEEVYELVDVEEEVASGGDDGGGRDGSISVTLTDPDILNCCICCEPLATPVYQCKNGHIACSTCWVRIAHKCYSCRKPISHIRCRAIEKVIESIKFSCRYARHGCIEKISHFNKSIHEKDCIYTPCWCPIDGCQFTAPSKKLSQHINQKHHGSVVNFHYDSLLHLKLGLNQKIIVLKELTDSNLFVIRNGQEQHMGNLFNVFHIGPESSAEMYEYELFARSQGCCLQLESFVNHTLGNNFPATTKFLLVPTDFLGPSPALKIEIRIYKVHESSRCG 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00201 385 CDD RING-HC_SIAHs 147 185 - -
Accr5g00201 385 MobiDBLite consensus disorder prediction 1 113 - -
Accr5g00201 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 255 IPR013083 -
Accr5g00201 385 SUPERFAMILY TRAF domain-like 202 375 - -
Accr5g00201 385 MobiDBLite consensus disorder prediction 67 113 - -
Accr5g00201 385 MobiDBLite consensus disorder prediction 50 66 - -
Accr5g00201 385 Coils Coil 63 111 - -
Accr5g00201 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 84 379 IPR044286 -
Accr5g00201 385 Pfam Seven in absentia protein family 191 332 IPR018121 GO:0005737|GO:0006511|GO:0007275
Accr5g00201 385 ProSiteProfiles Zinc finger SIAH-type profile. 202 260 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00201 Accr-Chr5 7743707 7745747 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00201 130 259 C3H Transcription Factor Family AT2G41980 34.091 7.95e-21 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00201 K04506 - gmx:100778869 250.366