Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00199 ATGGCGAGATCTCCAGGAGAGGGACCAAGCAGGAACAACAACTCTCCAATTCGAAAGCGACCTAGGATTACAGTTCGCCACAGAAATGGAGAGTCTGAGGAACGACATGTCGTAGAGGCACAAGGTGGCTGCACTAACCACCAAGATCGTGAAAGCAACACGGGAGAAGAAAGAGAACGGCAAAATGAAGGGACTAGAGAAGACGCTGAAGAAGCAGAAGATGCCAACGTGGAAGAAGAAGCAGAAGATGCCAACGTGGAAGAAGAAGCAGAAGATGCCAACGCGGAAGAAGAAGCAGAAGATGCCAACGCGGATGAAGAAGCAGAAGATGCCAACGCCGAAGAAGAAGCAGAAGATGCCAACGCGGAAGAAGAAGCAGTAGGCGTCCAAGTAGAAGAAGAAGAAGAAGAATCAGAAGAGATCTACGAAGTGGTTGACGTCGAAGAGGAAGTCGCTTCTGGGGGAGACGGTGGTGGTGGTAGAGATGAGTCAATTTCTGTGACTCTCACCGATCAAGATATTCTCAATTGCTGCATTTGCTGTGAGCCTTTGGCTACTCCTGTTTATCAGTGTAAGAATGGACATATTGCATGCTCTACCTGCTGTGTCCGAATTGCCCATAAGTGTTATTCATGCCGGGAGCCCATCAGCCACATCCGTTGCCGAGCCATAGAGAAGGTTATAGGGTCCATTAAATTATCATGCCGCTATGCAAGACATGGCTGTATAGAGAAAATTACTCACTTCAACAAAAGTATCCATGAGAAAGGTTGCATCTACACGCCATGTTGGTGCCCTATTGATGGTTGCCAGTTCACTGCTCCAAGCAAGAAGTTGCCCCAGCACATCAACCATGAGCATCAGGGAAGCGTTGTAAACTTTCATTATGATAGCTTACTCCATCTCAAGCTGGGGCTCAACCAGAAAATCGTTGTTCTTAAAGAGCTAACTGACTCTAATTTATTTGTTATAAGAAACGGTCAGGAGCAGCATATGGGCAATATGTTCAATGTCTTTCATATTGGCCCCGAGTCATCGGCTGAGATGTATGAGTATGAACTTTTTGCTAGATCACAGGGATGCTCTCTGAAACTGGAATCTTTTGTCAATCACACCCTTGGAAACAATTTTCCTGCTACAACAAAGTTCCTTCTGGTTCCAACTGATTTTCTCGGTCCTTCTCCAGCACTCGAGATAGAAATTCGCATATATAAAGTTTATGAATCCAGTAGATGCGGGTAA 1242 0.4573 MARSPGEGPSRNNNSPIRKRPRITVRHRNGESEERHVVEAQGGCTNHQDRESNTGEERERQNEGTREDAEEAEDANVEEEAEDANVEEEAEDANAEEEAEDANADEEAEDANAEEEAEDANAEEEAVGVQVEEEEEESEEIYEVVDVEEEVASGGDGGGGRDESISVTLTDQDILNCCICCEPLATPVYQCKNGHIACSTCCVRIAHKCYSCREPISHIRCRAIEKVIGSIKLSCRYARHGCIEKITHFNKSIHEKGCIYTPCWCPIDGCQFTAPSKKLPQHINHEHQGSVVNFHYDSLLHLKLGLNQKIVVLKELTDSNLFVIRNGQEQHMGNMFNVFHIGPESSAEMYEYELFARSQGCSLKLESFVNHTLGNNFPATTKFLLVPTDFLGPSPALEIEIRIYKVYESSRCG 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00199 413 MobiDBLite consensus disorder prediction 1 165 - -
Accr5g00199 413 CDD RING-HC_SIAHs 175 213 - -
Accr5g00199 413 Pfam Seven in absentia protein family 219 368 IPR018121 GO:0005737|GO:0006511|GO:0007275
Accr5g00199 413 MobiDBLite consensus disorder prediction 68 150 - -
Accr5g00199 413 MobiDBLite consensus disorder prediction 50 67 - -
Accr5g00199 413 ProSiteProfiles Zinc finger SIAH-type profile. 230 288 IPR013010 GO:0008270
Accr5g00199 413 SUPERFAMILY TRAF domain-like 230 402 - -
Accr5g00199 413 Coils Coil 55 137 - -
Accr5g00199 413 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 113 406 IPR044286 -
Accr5g00199 413 MobiDBLite consensus disorder prediction 26 40 - -
Accr5g00199 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 283 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00199 Accr-Chr5 7691595 7693765 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00199 142 288 C3H Transcription Factor Family AT2G41980 32.026 1.12e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00199 K04506 - gmx:100778869 247.669