Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00198 ATGGCGATATCTTCGGGAGAGGGACCAAGCAGGAACAACACCTCTCGTATTCGAAAGCGACCAAGGATTACAATTCGCTACAGAAGTAGAGAGTCCGAGGAACAACGTGTCATAGAGGCCCAAGGTGGGAGCACCAACCACGAAGATCATGAAGGCGATGCCGGAGAAGGAAGGGGACGGCAGAATGAAGAGATTGAAGAAGGAGAAAAAGACGCGGTCGCCTCTGAAGAAGAAGAGTCAGAAGACGTTATCGAAGAGTCACTCTGTGGAGAGAAAGTCACTTCTGGAGGACATGGTGGTGGTCGTGGTAGGGATGGATCCATTCCTGTGACTTTCACCGATCGCGATATTATTAATTGCTGCATTTGCTGTCAGCCTTTGACTATTCCTGTATTTCAGTGTGAGAATGGGCATATCGCATGCTCTACCTGCTGTGTCCGACTTGCTCGTAAGTGTTATTCATGCACGGCGCCCATTGGCAACATTCGTTGTGGAGCCATTGAGAAGGTGTTGAAATCTCTTGAAATATCATGCCGCTATGCAAGGCATGGCTGTATAGAAAAGATTACTCGCATCAACAAATGTATCCATGAGAAAGATTGCATCTACACCCCCTGTTGTTGCCCTATTTTTGGTTGCCAATTCACTGCTCCAAGCAAGAAGTTGTCCCAGCACATCAACCATGAGCATCATGGAAGCTTTATAAACTTTTATTATGATAGCTTCCTGTATCTCACGTTGGGGTTCAACCAGAAAGTCGTTATTCTCAAAGAGGTAACTGACTCTAATATATTTATCATAAAAAACGATCTGGAGTATTTGGGGAATGCGATCAAAGTCTTTCACATTGGCCCTAAGTCATCGGCTGAGACATATCGGTATGAACTTTATGTTAGATCACAGGGATGCTGTCTGAAACTAGATTCTTTTGTCAATCATACTCTTGGCAACAATTTTCCTGCTACAACAAAGTTCCTTCTGGTTCCAATTGATTTTCATGGCTGTTTTCCAGAAGTCAATATAGAAATTCGCGTATACAAAGTGCATGAATCTAGCAGGCGCGAGTAA 1068 0.4419 MAISSGEGPSRNNTSRIRKRPRITIRYRSRESEEQRVIEAQGGSTNHEDHEGDAGEGRGRQNEEIEEGEKDAVASEEEESEDVIEESLCGEKVTSGGHGGGRGRDGSIPVTFTDRDIINCCICCQPLTIPVFQCENGHIACSTCCVRLARKCYSCTAPIGNIRCGAIEKVLKSLEISCRYARHGCIEKITRINKCIHEKDCIYTPCCCPIFGCQFTAPSKKLSQHINHEHHGSFINFYYDSFLYLTLGFNQKVVILKEVTDSNIFIIKNDLEYLGNAIKVFHIGPKSSAETYRYELYVRSQGCCLKLDSFVNHTLGNNFPATTKFLLVPIDFHGCFPEVNIEIRVYKVHESSRRE 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00198 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 63 348 IPR044286 -
Accr5g00198 355 MobiDBLite consensus disorder prediction 69 85 - -
Accr5g00198 355 ProSiteProfiles Zinc finger SIAH-type profile. 173 231 IPR013010 GO:0008270
Accr5g00198 355 MobiDBLite consensus disorder prediction 26 68 - -
Accr5g00198 355 Pfam Seven in absentia protein family 162 307 IPR018121 GO:0005737|GO:0006511|GO:0007275
Accr5g00198 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 226 IPR013083 -
Accr5g00198 355 MobiDBLite consensus disorder prediction 1 105 - -
Accr5g00198 355 SUPERFAMILY TRAF domain-like 173 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00198 Accr-Chr5 7680142 7683013 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00198 101 230 C3H Transcription Factor Family AT2G41980 34.848 2.38e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00198 K04506 - cave:132183012 256.144