Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00197 ATGGCGATATCGTCGGGCGAGGGACCAAGCAGGAACAATACCTCTCTAAATCGAAAGCGACCTAGGATTACAATTCGCTACAGAAGTAGAGAGTCCGAGGAACGACATATCGTGGAGGCCCAAGGTGGGAGCACCAACCACGAAGATCGTGAACGCGATGCAGGAGAAGGAAGGGGACGGCAGAATGAAGAGATTGAAGAAGAAGCAGAAGACGCGGTCGCTGCCGAAGAAGAAGAATCAGAAGACGTCATCGAAGTGGTTGAAGTCGAAGAGTCATTCTTGAGAGGGAAGCCCGCTTCTGAAGGAGACGGTGGTGGTGGTAGGGATGGGTCCATTCCTGTGACTCTCACCGATCCTGATATTCTTAATTGCTGCATTTGCTGTCAGCCTTTGACTATTCCTGTATTTCAGTGTGAGAATGGGCATATCGCATGCTCTACCTGCTGTGTCAAACTTGCCAATAAGTGTTGTTATTCGTGCACGGCGCCCATTGGCAACATCCGTTGCCGAGCCATTGAGAAGGTGTTGGAATCTCTTAAAATATCATGCCGCTATGCAAGACATGGCTGTATAGAGAAAATTACTCACATCAACAAAAGTATCCATGAGAAAGATTGCATCTACACCCCATGTTGGTGCTTTATTGATGGTTGCCATTTCACTGCTCCAAGCAAGAAGTTGTCCCAGCACATCAACAATGAGCATCATGGAAGCTTTTTAAACTTCTATTATGATAGCTTCCTGTATCTCACGTTGGGGCTCAACCAGAAAGCCGTTGTTCTTAAAGAGGTAACTGACTCTAATATATTTATTATAAAAAACGACCTGGAGTATTTGGGGAATGCGATCAAAGTGTTTAACATTGGCCCTAAGGCATCGGTTGAGACATATCGGTATGAACTTTATGCTAGATCACAGGGATGCTGCCTGAAGCTAGATTCTTTTGTCAATCATACTCTTGGCAACAATTTTCCTGCTACAACAAAGTTCCTTTTGGTTCCAGTTGATTTTCGCGGCCCTTCTCCAGAAGTCAATATAGAAATTCGCGTATATAAAGTGTATGAATCGAGCAGGCGCGAGTAA 1083 0.4515 MAISSGEGPSRNNTSLNRKRPRITIRYRSRESEERHIVEAQGGSTNHEDRERDAGEGRGRQNEEIEEEAEDAVAAEEEESEDVIEVVEVEESFLRGKPASEGDGGGGRDGSIPVTLTDPDILNCCICCQPLTIPVFQCENGHIACSTCCVKLANKCCYSCTAPIGNIRCRAIEKVLESLKISCRYARHGCIEKITHINKSIHEKDCIYTPCWCFIDGCHFTAPSKKLSQHINNEHHGSFLNFYYDSFLYLTLGLNQKAVVLKEVTDSNIFIIKNDLEYLGNAIKVFNIGPKASVETYRYELYARSQGCCLKLDSFVNHTLGNNFPATTKFLLVPVDFRGPSPEVNIEIRVYKVYESSRRE 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00197 360 MobiDBLite consensus disorder prediction 26 65 - -
Accr5g00197 360 Pfam Seven in absentia protein family 167 304 IPR018121 GO:0005737|GO:0006511|GO:0007275
Accr5g00197 360 MobiDBLite consensus disorder prediction 1 20 - -
Accr5g00197 360 SUPERFAMILY TRAF domain-like 178 333 - -
Accr5g00197 360 MobiDBLite consensus disorder prediction 1 81 - -
Accr5g00197 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 231 IPR013083 -
Accr5g00197 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 63 352 IPR044286 -
Accr5g00197 360 MobiDBLite consensus disorder prediction 66 81 - -
Accr5g00197 360 Coils Coil 58 82 - -
Accr5g00197 360 ProSiteProfiles Zinc finger SIAH-type profile. 178 236 IPR013010 GO:0008270
Accr5g00197 360 CDD RING-HC_SIAHs 122 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00197 Accr-Chr5 7587242 7590065 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00197 75 235 C3H Transcription Factor Family AT2G41980 33.129 2.83e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00197 K04506 - gmx:100797881 253.062