Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00196 ATGGCGATATCTTCCGGAGAGGGACCAAGCAGGAACAACACCTCAGAAGACGCGGTCGCTGCCGAAGAAGAAGAATCAGAAGACGTCATCGAAGTGGTTGAAGTTGAAGAGTCATTCTTGGGAGGGAAGGCCGCTTCTGAAGGAGACGCTGGTGGCGGTGGTGGTAGGGATGGGTCCATTCCTGTGACTCTCACCGATCCTGATATTCTTAATTGCTGCATTTGCTGTCAGCCTTTGATTATTCCTGTATTTCAGTGTGAGAATGGGCATATCGCATGCTCTACCTGCTGTGTCCAACTTGCCAATAAGTGTTATTCGTGCACGGCGCCCACTGACAACATCCGTTGCCGAGCCATTGAGAAGGTGTTGGAATCTCTTAAAATATCATGCCGCTATGCAAGCCATGGCTGTATAGAGAAAATTACTCACATCAACAAAAGTATCCATGAGAAAGATTGCATCTACACCCCATGTTGGTACTTTATTGGTGGTTGCCATTTCACTGCTCCAAGCAAGAAGTTGTCCCAGCACATCAACAATGAGCATCATGGAAGCTTTATAAACTTCTATTATGATAGCTTCCTGTATCTCACGTTGGGGCTCAACCAGAAAGCCGTTGTTCTTAAAGAGGTAACTGACTCTAATATATTTATTATAAAAAACGACCTGGAGTATTTGGGGAATGCGATCAAAGTCTTTCACATTGGCCCTAAGCCATCGGTTGAGACATATCGGTATGAACTTTATGCTAGATCACAGGGATGCTGCCTGAAGCTAGAGTCTTTTGTCAATCATACTCTTGGCAACAATATTCCTGCTACAACAAAGTTCCTTTTGGTTCCAGTTGATTTTCTCGGCCCTTCTCCAGAAGTCAATATAGAAATTCGCGTATATAAAGTGCATGAATCCAGCAGGCGCGAGTAA 924 0.447 MAISSGEGPSRNNTSEDAVAAEEEESEDVIEVVEVEESFLGGKAASEGDAGGGGGRDGSIPVTLTDPDILNCCICCQPLIIPVFQCENGHIACSTCCVQLANKCYSCTAPTDNIRCRAIEKVLESLKISCRYASHGCIEKITHINKSIHEKDCIYTPCWYFIGGCHFTAPSKKLSQHINNEHHGSFINFYYDSFLYLTLGLNQKAVVLKEVTDSNIFIIKNDLEYLGNAIKVFHIGPKPSVETYRYELYARSQGCCLKLESFVNHTLGNNIPATTKFLLVPVDFLGPSPEVNIEIRVYKVHESSRRE 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00196 307 ProSiteProfiles Zinc finger SIAH-type profile. 125 183 IPR013010 GO:0008270
Accr5g00196 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 21 300 IPR044286 -
Accr5g00196 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 178 IPR013083 -
Accr5g00196 307 MobiDBLite consensus disorder prediction 1 16 - -
Accr5g00196 307 CDD RING-HC_SIAHs 70 107 - -
Accr5g00196 307 MobiDBLite consensus disorder prediction 1 28 - -
Accr5g00196 307 Pfam Seven in absentia protein family 114 259 IPR018121 GO:0005737|GO:0006511|GO:0007275
Accr5g00196 307 SUPERFAMILY TRAF domain-like 125 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00196 Accr-Chr5 7576365 7578998 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00196 68 182 C3H Transcription Factor Family AT2G41980 35.897 6.02e-19 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00196 K04506 - gmx:100797881 248.825