Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00160 ATGGCTCATTCAGTTGAACCATCCTCATCTTTGAGCTTTACTTCATCTTCCCGTTTATCAAATGGCTCAGTTAGCCATAATGTATGTGCTTCTCACTGCCCTGATCTTGGACCCAACCTCGAAGCAATCAGTTTGAGTAAGCTCAGCTCTAATTTAGAGCAGCTTTTGGATGATTCTGATTGTGATTACAGTGATGCTGACATAATTGTTGAAGGAACTCCGGTTGTTGTTCATCGATGTATTCTTGCCTCTAGAAGCAAGTTTTTTCATGAGTTATTTAAGAGGGAGAAAGGACCTCAAGAGAAGGAAGGCAAATTAAAGTATTTGATGAGTGATTTCTTGCCTTATGGCAAGGTTGGATATGAAGCCTTCCTCATTTTTTTGAGATATGTGTATACTGGGAAACTCAAGCCCTCTCCAATGGAGGTCTCAACATGTGTTGACAATGTATGTGCCCATGATGCTTGTCGGCCTGCAATTAATTTTGCTGTTGAGCTGATGTATGCATCTTCCATTTTTCAAATGCCTGATCTGGTATTACTTTTCCAGCGACGACTTCTTAATTTTGTAGGGAAGGCTTTTGTGGAAGATGTTATACCAATCCTCATTGTTGCTTTCCATTGTCAATTGAGTCAACTTGTCACTGAATGCATTGAACGGGTGGCACGATCAGACCTAGACTATGTCTCAATTGATAAGGAGATTCCCCCTGAACTCTCAGAAAAAATTAAACTACTTCGGCACAGCGCCCAGCACGATGTTGAAGATAATGCTTCTTTGGTGGATCCATTGCATCAAAAGAGAATTACTAGAATACACAAGGCTTTGGACTCAGATGATGTGGAGCTTGTTAAACTTCTTTTATCCGAGTCTGATATAACTTTAGATGAAGCCAATGCTCTCCATTACGCTGCAGCGTACTGTGATCCTAAGCTTTTCTCTGAGGTACTTAATTTGGGTCTGACTAATGTCAATCTTCGGAATTCTCGAGGATATACTGTTCTTCATATTGCTGCCATGCGTAAGGAGCCTTCAATTATAGTTTCACTTCTTAAAAAGGGGGCTCTTGCATCAGAATTAACTTTGCATGGTCAAAGTGCTGTAAGCATCAGCCGGAGGTTAACGAGGCCAAAAGATTACCATGCAAAAACAGAACAGGGGAAGGAAACAAACAAAGACCGAATGTGTATCGATCTTCTTGAAAGAGAAATGCTGAGAAATCCGATGTCTGGTGATGCCTCTATGTCTTTCCAAATAACGGGTGATGATCTGCAAAGGAAGCTGCAATACCTTGAGAACAGAGTGGCATTGGCAATATTGTTCTTCCCTGCGGAAGCCAAAGTAGCCATGGACATTGCTGAGGCTGAGACAAAAGGCTCAGGTGGGAATTTCAGGGAGGTTGATCTAAATGAGACTCCCATAATGCAAAACAAAAGACTTGTTTCCAAGGTGGAAGCCCTTATGAAAACAGTGGAGACTGGCCGACGATACTTTCCTCATTGCTCAGAAGTGCTGGATAAGTTCATGGAGGATGAGCTGCCTGATTTGTGTTACCTTGAGAAGGGTTCTCAAGAAGAACAGAGAATGAAGACAACAAGATACATGGAGCTTAAAGACAATGTTCAAAAGGCCTTCAACAAGGACAAAGCCAATTTTTGCCACTCTGGGATTTCTCCTTCATCTTCCTCATCTTCCCTCAACAATAATCTTGTGCATGGCAAGGCAAGAAAAGTGTGA 1737 0.418 MAHSVEPSSSLSFTSSSRLSNGSVSHNVCASHCPDLGPNLEAISLSKLSSNLEQLLDDSDCDYSDADIIVEGTPVVVHRCILASRSKFFHELFKREKGPQEKEGKLKYLMSDFLPYGKVGYEAFLIFLRYVYTGKLKPSPMEVSTCVDNVCAHDACRPAINFAVELMYASSIFQMPDLVLLFQRRLLNFVGKAFVEDVIPILIVAFHCQLSQLVTECIERVARSDLDYVSIDKEIPPELSEKIKLLRHSAQHDVEDNASLVDPLHQKRITRIHKALDSDDVELVKLLLSESDITLDEANALHYAAAYCDPKLFSEVLNLGLTNVNLRNSRGYTVLHIAAMRKEPSIIVSLLKKGALASELTLHGQSAVSISRRLTRPKDYHAKTEQGKETNKDRMCIDLLEREMLRNPMSGDASMSFQITGDDLQRKLQYLENRVALAILFFPAEAKVAMDIAEAETKGSGGNFREVDLNETPIMQNKRLVSKVEALMKTVETGRRYFPHCSEVLDKFMEDELPDLCYLEKGSQEEQRMKTTRYMELKDNVQKAFNKDKANFCHSGISPSSSSSSLNNNLVHGKARKV 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00160 578 ProSiteProfiles Ankyrin repeat profile. 330 355 IPR002110 GO:0005515
Accr5g00160 578 FunFam Regulatory protein NPR3 38 222 - -
Accr5g00160 578 Gene3D Potassium Channel Kv1.1; Chain A 39 222 IPR011333 -
Accr5g00160 578 ProSiteProfiles BTB domain profile. 64 140 IPR000210 GO:0005515
Accr5g00160 578 Pfam Ankyrin repeats (3 copies) 273 355 IPR002110 GO:0005515
Accr5g00160 578 Pfam BTB/POZ domain 62 159 IPR000210 GO:0005515
Accr5g00160 578 SMART BTB_4 64 190 IPR000210 GO:0005515
Accr5g00160 578 MobiDBLite consensus disorder prediction 556 578 - -
Accr5g00160 578 Gene3D - 241 404 IPR036770 -
Accr5g00160 578 SUPERFAMILY Ankyrin repeat 260 371 IPR036770 -
Accr5g00160 578 CDD BTB_POZ_NPR_plant 47 190 - -
Accr5g00160 578 SMART ANK_2a 330 362 IPR002110 GO:0005515
Accr5g00160 578 SMART ANK_2a 296 326 IPR002110 GO:0005515
Accr5g00160 578 SMART ANK_2a 267 295 IPR002110 GO:0005515
Accr5g00160 578 ProSiteProfiles Ankyrin repeat region circular profile. 330 355 - -
Accr5g00160 578 MobiDBLite consensus disorder prediction 556 571 - -
Accr5g00160 578 PANTHER REGULATORY PROTEIN NPR3 10 569 IPR044292 GO:0009862|GO:2000022|GO:2000031
Accr5g00160 578 Pfam NPR1/NIM1 like defence protein C terminal 372 564 IPR021094 -
Accr5g00160 578 SUPERFAMILY POZ domain 47 188 IPR011333 -
Accr5g00160 578 FunFam regulatory protein NPR3-like 264 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00160 Accr-Chr5 6520979 6528350 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Accr5g00160 NPR1_like_C 2.2e-79 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00160 K14508 - gmx:100217338 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g00160 5 6520979 6528350 Accr5g00160 5 6520979 6528350 ECH