Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00089 ATGTCTAACCAAACTACTGGGCCATCCGTATTTGAAATTGATCAACATACAAGTTTTGGACCTGAAATAATTTTGACTGTGCTTCTTGATATTCAAGGCGACCATGTTTCAGAAAGCGAGTTTGAAGAAATGTTCGAAGAATCATATTCAGAAGAAGGGGAGGACGACGGCAATACTGACGATGAAGAAATAGAAGGAGACGACGGCAATGATCACCGGAAGTCAATAGAAAATTTAGAAAAGGTTAAGATTCAAGGGTTTTTAATGTGTTCAATATGTTTGGAGGAGATTACTCCCTCAGATAAAGAAGAAGAAGAAGGAGACGTTCGAATTCCTAAGCCTTGTGGTCATGTGTATCATCATAGCTGCATCACCAAATGGCTCATCAACCACCATACTTGTCCTCTTTGTCGCTTCAAGATTACAAGCTAA 432 0.3935 MSNQTTGPSVFEIDQHTSFGPEIILTVLLDIQGDHVSESEFEEMFEESYSEEGEDDGNTDDEEIEGDDGNDHRKSIENLEKVKIQGFLMCSICLEEITPSDKEEEEGDVRIPKPCGHVYHHSCITKWLINHHTCPLCRFKITS 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00089 143 ProSiteProfiles Zinc finger RING-type profile. 90 138 IPR001841 -
Accr5g00089 143 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 56 140 - -
Accr5g00089 143 SUPERFAMILY RING/U-box 89 142 - -
Accr5g00089 143 SMART ring_2 90 137 IPR001841 -
Accr5g00089 143 MobiDBLite consensus disorder prediction 39 73 - -
Accr5g00089 143 MobiDBLite consensus disorder prediction 40 66 - -
Accr5g00089 143 Pfam Ring finger domain 89 138 IPR001841 -
Accr5g00089 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 143 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00089 Accr-Chr5 2888385 2888816 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00089 89 141 C3H Transcription Factor Family AT1G21960 43.396 4.31e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00089 - - vri:117920644 71.2478