Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00082 ATGGTCTTCGCAGCATCCTTTATGCATGAAGATGGCCCTTTTTCTTTCTCCAAGAAGAGGCTGATAGTATCAGATTTTGGATATCAAGATCTACATCCACATGCATATGCAGGACCTTTCAGTGATGCACCATTGCCTTCACATCTCGATGTAGAAAGGGATACTGGTGATATTCCCTCTTCTTCCAGTCTTGATGATAGAGTTGATTCAGATTCTGAATTGGATATGAGCTGCAAGACTAATATTAAAAGCATTGATATTCCTGTATGCTTTACATCAGGAGATATTTCATTCCAGGATCAAAGCCATCCTGGCTATATGCAGCCTGCTTTTGTTAGTGGATGGATGTATGTCAATGAAAATGGGCAAATGTGTGGTCCCTATATCCAGGAGCAACTATATGAAGGATTAACTACTGGTTTCTTGCCAGCTGAGCTTCCTGTGTATCCTGTGATTAATGGCGCATTAATGAACCCTGTACCATTGAATTACTTCAAGCAGTTTCCTGATCATGTTTCCACTGGGTTCGTATATCTGAGCATGAGTAGCTCAGTCATAACCGTGCCTACAGGTTGCTCCACTTCATCTGGTAAGGATATGACATCATATAGACAAGGATCCTTTGAGCATGCTCCTCCTGTAGCTGTCAACCTTGATTCACTGACAGTTTTTCAGTCGCATGTCAACTACACCAGTAAGGAATTCTTAACATCGCACTCAAAGGTACCCAATTGCATAATGTCTTGTCTGAGGTTACATGAAGAATGCTGTTGGCTTTATGAGGATGAAAAAGGAAAGAAACATGGACCACATTCCATTTTGGAATTAATTTCCTGGCATCATTATGGACATCTCAGAGATTCGTCAGTGATTCATCATACTGAAAATAAGTGTAGCCCCTTTGTCCTTTTGTCTGCTGTAAATGCATGGAAAACAGGAACGTTTGAAAACATCTGTAGATCAGATTCCAAAAGTGACAGGGCTTGTAGTGATACCAGAAGCTTCATGTATGAAATATCTGAAGACATTTCTTCCCAGCTGCATTCAGGAGTCATGAAAACTGCCCGTAGGGTGGTGTTGGATGAGATTATCAGTAACACCATTGCAGAATTTGTTACTGAAAAGAAATCTCGGAGGCATAAGCATGACTTAGTTGATCAGCCTTCTGAGACTAGCTTGTTAGGCTGCAGAATGTCTGAGACTGCTGTGGAGATGAGAAAAGGTACTGTTCTTACAAGTGAGCCTTCATCTTCCCAAATGCTTGATGATCAGTCGTCTTGCAAAGTTTCCAAAATGTCTCCCACAAGCACTAAATCAGTTGGAAGCATTGAAAACTTTTGGTGGTCATATGCCGTTGTTCGAAAAGTACTTAATGATTATTGCATGCAAGTCATGTGGAATGCTGTGGTTTATGACTCTATGGCAGAGTACATACATAACTGGAGAAAGAGAAAACTATGGTCTATTTGTCCTAAGCCTGGATTATCTATTAGTGGATGTAAAGATTATGATGGAATTATCACATCAGCAGAAGCCTTGCTTCCCAGGCCAGGTTCCTCTGAACATGATGCTGTTCGGCATCCTCATTGTGGAGTGGTGGCAATGGAGGGGGACTATCTTAGTCAATCATTTTCTATGTCTTCTGCTGTCTTGAAAGATGGAAACATTTCAGAAAATGGAAGAGCATCATGTTCTGACAGTGATCATGGAGATTTGACATGTATTATTGAAAATATGGAGAATGAGCTTCACTCAATGTCAGAGGCATCTTTAACTGAATACATTAAAAGTTTAGTTGACAAGGAAGTGAAAAGATTATTTAATTGTCCCCAAGAAGACACTTTGAATAAGGATGCTGTCAGTGATGACGTTTTTTCAGAGATATCTTGTGACAAAACATCTGAAGAGGGGATTTTATCTGACAATAAGGTTGCTATGATAGAAGGCGGTGGTCTTCAAGATTCTATATCTGGAAACCATATGTCTACTTTATTCTCAAGAGCATTTCAGGAGTTGCATGCCAATGTAGGTGATGTGGATAATGAAAAGGAAATTGGTGACATCTTACCTCCTGGATGTGAAAAGAATTCAAAAACTATTCTCCCACAATACAATTATAAGTATAGACCTTCAAGATTAGTTGAAAATGTTCCTAAGATAACACAATATGTCACAACAGCCCTATGCCGACAGAGGCTGCATTCTGAGGTTCTTGAAGAGTGGAAATCTTCGTTTCTTGATGCTACATTCAATCAACTTTTTGCATCATTCTTTGCTGCAAAGAAAGTCAGCCAGCCTGATGGTTGCATGGAAGGGAGGGTACAAATTTCATCTGAGGAACATTTGAACGATCCAGCTCTGGGAAGAATGAAGAAAATACCCAAAATTTCTTCATCTGAAGATTCTCGGATGGTTGGGAAATATGCAAATCATCGCAAGAAGCTTCCACAGAAAGAGTTAGGTTCTTCTCAAAACATATCTGCGCCTGTCAAAAAACAAGTGGATAAGCAGAAGAAACCTGTGGATAAGCAGAAGAAACGTGTTTCTGGGGATTTGGATGACTCTGCCAAAGGTGCAATATCTCCTGATAAAAATGCACAGACTAAGCTGATAAAAGGGAAGAAGAATAAACAGGCTAATGGAAAGTTTCTTACTGTCAGTCCTAAAAGAAACTTGCTGAGTAAAAAGTCATCTATAAATGATGCAACTAGTAAAAAATTATTGAAGCATTCACAGGCAGGTCTAGATGATGTCAAGGATGATGAGAAAAGTAATGGAGAGAAGATTTCAACTGTTATAGAAAATAGTGTTGGCAAGAAAAAGGTAGTTGATAACAACGGTCATGATGGAGCCATTAATGGAAAATCCACTCGCCACTGCTCCAGGGAAACTCTCATCGCAACAAATAAAGTATCAAAACCAAAAAGGAAGCCTCTTGTGGATGATGTGCCATCCTCACGTCCCTCAAAGGCTTTGAAAATTGCTTATCATGGTTCAAAGGTTGGAGTTGGTGGACACATGTCAAAGACGAAGTCTGCTAAATCCAAGCCATTGAATTTATGTCCTAGATCTGTTGGATGTTCCAGGACTTCTATTGATGGGTGGGAATGGCATAAATGGTCTCTAAATGCTAGTTCTTCTGATAGAGCACGTGTTAGGGGAACACTCTGTGGCCAAAAGAACTATATTCCATCTGATAGTAATCCAACTCATTGGTCAAATTGTAAGGGTCTTTCTGCACGGACAAATAGAGTGAAAATGCGTAACCTTCTTGCAGCTGCAGAAGGTGCTGATCTTCTGAAAGCCACTCAATTGAAGGCAAGGAAAAAACGTCTACGTTTTCAAAGAAGTAAAATTCATGACTGGGGTATAGTTGCCTTGGAGTCAATAGAGGCGGATGACTTTGTGGTTGAATATATTGGAGAACTAATCCGTCCTCGGATATCTGATATACGTGAACGTCAGTATGAAAAGATGGGAATTGGCAGCAGCTACTTGTTTAGACTTGATGATGGTTATGTGGTTGATGCTACAAAGCGAGGTGGGATTGCAAGATTTATAAATCACTCTTGTGAGCCTAATTGCTATACCAAGGTCATATCTGTTGAGGGTCAAAAGAAGATTTTCATATATGCTAAGCGTCATATAGCTGCTGGTGAAGAAATTACATACAATTATAAATTTCCCTTGGAGGAGAATAAGATTCCCTGCAACTGTGGCTCCAAAAAGTGTCGTGGATCACTGAATTAG 3750 0.3989 MVFAASFMHEDGPFSFSKKRLIVSDFGYQDLHPHAYAGPFSDAPLPSHLDVERDTGDIPSSSSLDDRVDSDSELDMSCKTNIKSIDIPVCFTSGDISFQDQSHPGYMQPAFVSGWMYVNENGQMCGPYIQEQLYEGLTTGFLPAELPVYPVINGALMNPVPLNYFKQFPDHVSTGFVYLSMSSSVITVPTGCSTSSGKDMTSYRQGSFEHAPPVAVNLDSLTVFQSHVNYTSKEFLTSHSKVPNCIMSCLRLHEECCWLYEDEKGKKHGPHSILELISWHHYGHLRDSSVIHHTENKCSPFVLLSAVNAWKTGTFENICRSDSKSDRACSDTRSFMYEISEDISSQLHSGVMKTARRVVLDEIISNTIAEFVTEKKSRRHKHDLVDQPSETSLLGCRMSETAVEMRKGTVLTSEPSSSQMLDDQSSCKVSKMSPTSTKSVGSIENFWWSYAVVRKVLNDYCMQVMWNAVVYDSMAEYIHNWRKRKLWSICPKPGLSISGCKDYDGIITSAEALLPRPGSSEHDAVRHPHCGVVAMEGDYLSQSFSMSSAVLKDGNISENGRASCSDSDHGDLTCIIENMENELHSMSEASLTEYIKSLVDKEVKRLFNCPQEDTLNKDAVSDDVFSEISCDKTSEEGILSDNKVAMIEGGGLQDSISGNHMSTLFSRAFQELHANVGDVDNEKEIGDILPPGCEKNSKTILPQYNYKYRPSRLVENVPKITQYVTTALCRQRLHSEVLEEWKSSFLDATFNQLFASFFAAKKVSQPDGCMEGRVQISSEEHLNDPALGRMKKIPKISSSEDSRMVGKYANHRKKLPQKELGSSQNISAPVKKQVDKQKKPVDKQKKRVSGDLDDSAKGAISPDKNAQTKLIKGKKNKQANGKFLTVSPKRNLLSKKSSINDATSKKLLKHSQAGLDDVKDDEKSNGEKISTVIENSVGKKKVVDNNGHDGAINGKSTRHCSRETLIATNKVSKPKRKPLVDDVPSSRPSKALKIAYHGSKVGVGGHMSKTKSAKSKPLNLCPRSVGCSRTSIDGWEWHKWSLNASSSDRARVRGTLCGQKNYIPSDSNPTHWSNCKGLSARTNRVKMRNLLAAAEGADLLKATQLKARKKRLRFQRSKIHDWGIVALESIEADDFVVEYIGELIRPRISDIRERQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEENKIPCNCGSKKCRGSLN 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00082 1249 Gene3D - 102 176 IPR035445 -
Accr5g00082 1249 Gene3D - 248 333 IPR035445 -
Accr5g00082 1249 Pfam SET domain 1122 1226 IPR001214 GO:0005515
Accr5g00082 1249 SUPERFAMILY GYF domain 253 307 IPR035445 -
Accr5g00082 1249 CDD SET_SETD1 1098 1245 IPR037841 GO:0042800|GO:0048188
Accr5g00082 1249 SMART PostSET_3 1233 1249 IPR003616 -
Accr5g00082 1249 ProSiteProfiles GYF domain profile. 255 305 IPR003169 GO:0005515
Accr5g00082 1249 Gene3D SET domain 1022 1249 IPR046341 -
Accr5g00082 1249 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 792 1249 IPR044570 GO:0042800|GO:0051568
Accr5g00082 1249 MobiDBLite consensus disorder prediction 780 881 - -
Accr5g00082 1249 ProSiteProfiles Post-SET domain profile. 1233 1249 IPR003616 -
Accr5g00082 1249 SUPERFAMILY SET domain 1105 1246 IPR046341 -
Accr5g00082 1249 MobiDBLite consensus disorder prediction 413 434 - -
Accr5g00082 1249 MobiDBLite consensus disorder prediction 832 853 - -
Accr5g00082 1249 MobiDBLite consensus disorder prediction 47 70 - -
Accr5g00082 1249 MobiDBLite consensus disorder prediction 784 798 - -
Accr5g00082 1249 ProSiteProfiles SET domain profile. 1110 1227 IPR001214 GO:0005515
Accr5g00082 1249 SMART set_7 1110 1233 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00082 Accr-Chr5 2462371 2472732 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00082 1109 1249 C2H2 Transcription Factor Family AT2G23740 37.423 6.80e-20 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Accr5g00082 SET 4.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00082 - - ccaj:109804065 1311.59