Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00058 ATGGTTTCTTCTTTGCCTCTTTCTCAGCCTACTAGTCACAGCTTCTTTTCTAAAACCCAGTTGAGAGGATTTGGCCATGGCTCCTGGCGACCAAGCTTCTCATTTTGCCGCGACTCCGAAAGCAAAGTTCGACCCATCAAAGCATTAGTTGAAACAGCCCCATTCCCCTTGTTCCAACCTTCCAAAGTTGAAGAGTCGTCGTCTGAGTTGGAGCCAGCGGACCCAGATTTCTACAAGATAGGTTTTATTCGAAGCATGCGAGCTTATGGAGTTGAGTTTAAGGAAGGTCCTGATGGCTTTGGTGTTTATGCTTCTAAAGATGTAGAACCTCTTCGCCGAGCCAGGGTTATAATGGAAATTCCTCTTGAATTGATGTTAACTGTGAGACAGAAGCTCCCATGGATGTTCTTCCCTGATATAATTCCAGTGGGACATCCAATATTTGATATTATCAACTCAACAAATCCAGAGACAGATTGGCATCTAAGATTAGCATGCCTGCTGTTATATGCATTGGACTGTCAGGACAACTTTTGGCAGTTGTATGGTGACTTCTTACCCAGTGCTGATGAATGCACTAGCTTACTTCTGGCAACAGAGGAGGAACTTTCCGAGCTGCAGGATCCAAATCTTGCATCTACCATCAGGAACGAGCAACGTCGTGCCTTGGAATTTTGGGAGAAGAATTGGCACAGTGGTGTTCCGCTTAAAATAAAGCGTCTTGCTCGTGATCCACAAAGGTTCATGTGGGCAGTAGGCATAGCACAGTCACGATGCATTAACATGCAAATGAGGCTTGGCGCACTACATCAAGGTGCAAATATGCTGATTCCTTACGCTGACATGCTGAACCATTCATTTGAGCCAAATTGCTTTTTCCATTGGCGCTTCAAGGACCGGATGGTTGAGGTCCTTATAAATGCTGGACAGAGGATTAGAAAGGGAGATGAGATGACGGTTGATTACATGAGCAGACAAAAGAATGACATATTTATGCAAAGATATGGCTTCTCATCACCTGTGAATCCTTGGGATGAGATCAAATTCTCTGGAGATGCACGTATACATTTGGATTCCTTCTTGTCGGTGTTCAACATATCTGGCCTTCCTGAAGAGTATTATCATAACATCATAGCTGCAGCACGAACGCTACCAAGTTGGTCAGATGGGGATGTACCTCCAATTCCTAGCGTGGAATGGAAGGCTGCGAAGGACTTACAAAATGAATGCCAGGAAATGCTTGCAGAATTTCCCACAACCTCCAAGCAAGACCAAAAATTGCTAGATTCATTGCAAGATGCTACCAGGACTCTTGAAGCTGCAATAAAGTACAGATTGCACCGGAAATTGTTCATAGAGAAAGTCATCCAAGCATTAGACTTGTATCAAGAGAGATTACTCTTTTGA 1407 0.4399 MVSSLPLSQPTSHSFFSKTQLRGFGHGSWRPSFSFCRDSESKVRPIKALVETAPFPLFQPSKVEESSSELEPADPDFYKIGFIRSMRAYGVEFKEGPDGFGVYASKDVEPLRRARVIMEIPLELMLTVRQKLPWMFFPDIIPVGHPIFDIINSTNPETDWHLRLACLLLYALDCQDNFWQLYGDFLPSADECTSLLLATEEELSELQDPNLASTIRNEQRRALEFWEKNWHSGVPLKIKRLARDPQRFMWAVGIAQSRCINMQMRLGALHQGANMLIPYADMLNHSFEPNCFFHWRFKDRMVEVLINAGQRIRKGDEMTVDYMSRQKNDIFMQRYGFSSPVNPWDEIKFSGDARIHLDSFLSVFNISGLPEEYYHNIIAAARTLPSWSDGDVPPIPSVEWKAAKDLQNECQEMLAEFPTTSKQDQKLLDSLQDATRTLEAAIKYRLHRKLFIEKVIQALDLYQERLLF 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00058 468 CDD SET_LSMT 90 337 - -
Accr5g00058 468 ProSiteProfiles SET domain profile. 78 323 IPR001214 GO:0005515
Accr5g00058 468 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 67 438 - -
Accr5g00058 468 Gene3D set domain protein methyltransferase, domain 1 82 337 - -
Accr5g00058 468 Pfam SET domain 99 322 IPR001214 GO:0005515
Accr5g00058 468 SUPERFAMILY SET domain 98 338 IPR046341 -
Accr5g00058 468 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 83 337 - -
Accr5g00058 468 Pfam Rubisco LSMT substrate-binding 399 449 IPR015353 -
Accr5g00058 468 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 334 460 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00058 Accr-Chr5 1470272 1496660 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Accr5g00058 SET 6.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00058 - - qsa:O6P43_013372 786.949