Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00056 ATGAATCTTTCTTTGAGTGTTGGAAATGGCTCTGGTGATGAGCAAAACACTGCAACCTCTCATCAAACTGGAAAGAGGAGGTCTTCTCATCGTCACACTCCTCTCCAGATCCAGAGACTCGAAGAGTTTTTCAATAAGTGTCCACACCCTGATGAGGAAGAACGCAGAGATTTAAGCAAGGAGCTTGGACTTAAACCCAGACAAGTCAAGTTCTGGTTTCAGAACAAGCGAACTCAAGCCAAGACACTAAGTGAGAGGGTAGATAACAACGCTCTTCGTGCTGAGAATGAAAGGATTCAGTCAGAGAACTCAGCAATCAGGGAGTTTCTCAAGAGTAGCGTATCATGCCCTGCTTGTGGTGGTCCTTCCAATGGACATGTAGAACACAAATTTACTATGCAAAGACTGATCCAAGAGAATGCCTATCTCAGACAACAGTGTGAAAAAGCAACGAGGCTTCTGGCGGACTATGCTGGGAAACCTCTGAGGATCCAAAAGAATTTCCTAACCCTAGGAACTCCATCAACGTCGTCGTCGTCATCATCAGAATATGGCTTGTCCTTGTCCTTGTACGGTGACAACAGTAACTTGTTGCCAAAACAAGGAAGCAACAAGGCCGTAATGTGGGAAACGGCCGTTTGCGCCAGAGAAGACCTGATGAAGCTTTTGTGCGCGGACGCGCCGCTCTGGATCAGCCCTGAAATATCCGCTGTGGACCATGTCGACCATGGTTTCTTCTTCCTCCCGAACCCGGAAACCTACGAAAGGATATTCCTAAAGGCTCATCATCTCCGCAAGAGGCTTACCGAGAATGCTCTAGTTGAATGCTCTAAGGCTTCTTCTGTCATCACCATGCCTCCCTTGCAGTTGGTTGACATGTTTCTCGACTGTGACAAATGGGTTAATCTGTTCCCAACAATTGTTGGGAAAGCAAGCACAGTAAAAGTGCTTCAACCTGGTGCTCTTGGGAGCAGGAATGGAGCCTTGCAACTGATGCATGAAGAACTTCACATGCTTACGCCTTTGGTGCCACCTCGTGAATTTGTGTTCCTTCGACAGTGTTTCCAACCAGACCAGACAACATGGGTAATAGGTGATGTGTCGTTTGTCCCGCTTGAAGACATTGGTGTTCCTTATTCTTCCTCCTTTTGGAAGCTTCCCTCTGGTTGCATGATTCAAGAACTCTCCAATGGCTTCTCCAAGGTTACTTGGGTGGAACATGTGGAAGTGGGGCACGAGAGCCTTATAGTGCACATGCTATACAGAAACCTTGTGTCTAGTAGAGTTGCTTATGGAGCTCAACGATGGGTGGTGGCACTTGAGAGAACGTGTGAGAGAATTGGAAGCTTTTTAAGCCGTCACATTCCTTATGAGGAAGCCACTTCAGGGATGATGAGAATACCAGAGGGAAGAAGCAGCTTGATGAGGCTAGGGCAAAGGATGATGAAGAGCTTCTGTAGAGTTATAAGCATGAAGAGTGCTATTAATGGTGGAGATATAAGTGAAGAGAATATTAATATTAATAATAATAATGACATTGGTATCAGAGTGTTCAGTCGCAAAAACTTTGAGAGAGGTGAGCCTCATGGCATTACTCTCACTGCTGCTGTTCCTATTTGGCTTCCCCTTCCTCCCAACTATGTCTTCTACTACCTTCGCGACGTCTCTCGCCGGTTTCAGTGGGATGTTCTGTGCACTGAAAATTTAGAGCAAGAAGTTGTTCGCATCTCAACTGGAACTCATCATGCAAGCAACATATCAGTTATCCAGGCATACAGTGAGAGTGACGACGTTGCGATCGTTCAAGAAACTTGTGTTGAACCAATGGGATGTATCCTTGTGTACGCTCCAGTGGATAAGGTGGCACTGAAGGCGGTGATGCAAGGTGGGGATTCGACTGACTTGACGATGCTGCCGTCCGGCTTTGTGGTCTCGAGGGACAGCATGGGAATACCCATTGGCGGCAGCTGTGGCGCTTCTTCTTCCGGCAGCGGAGGGTCAATACTGACGATGACTTTACAGATTCTGGTGAGCGACAACAGGATGGACAAGACGAGCTTGAGCATGGAGAGTGTGGCCGCCGTGAACCACCTCATGACCACCACATTGGACAAGATCAAGTTTGCTCTCATGAAGAATAATTAG 2145 0.4713 MNLSLSVGNGSGDEQNTATSHQTGKRRSSHRHTPLQIQRLEEFFNKCPHPDEEERRDLSKELGLKPRQVKFWFQNKRTQAKTLSERVDNNALRAENERIQSENSAIREFLKSSVSCPACGGPSNGHVEHKFTMQRLIQENAYLRQQCEKATRLLADYAGKPLRIQKNFLTLGTPSTSSSSSSEYGLSLSLYGDNSNLLPKQGSNKAVMWETAVCAREDLMKLLCADAPLWISPEISAVDHVDHGFFFLPNPETYERIFLKAHHLRKRLTENALVECSKASSVITMPPLQLVDMFLDCDKWVNLFPTIVGKASTVKVLQPGALGSRNGALQLMHEELHMLTPLVPPREFVFLRQCFQPDQTTWVIGDVSFVPLEDIGVPYSSSFWKLPSGCMIQELSNGFSKVTWVEHVEVGHESLIVHMLYRNLVSSRVAYGAQRWVVALERTCERIGSFLSRHIPYEEATSGMMRIPEGRSSLMRLGQRMMKSFCRVISMKSAINGGDISEENININNNNDIGIRVFSRKNFERGEPHGITLTAAVPIWLPLPPNYVFYYLRDVSRRFQWDVLCTENLEQEVVRISTGTHHASNISVIQAYSESDDVAIVQETCVEPMGCILVYAPVDKVALKAVMQGGDSTDLTMLPSGFVVSRDSMGIPIGGSCGASSSGSGGSILTMTLQILVSDNRMDKTSLSMESVAAVNHLMTTTLDKIKFALMKNN 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00056 714 SMART HOX_1 25 87 IPR001356 GO:0003677
Accr5g00056 714 Coils Coil 133 153 - -
Accr5g00056 714 FunFam Homeobox-leucine zipper protein HDG1 12 99 - -
Accr5g00056 714 SUPERFAMILY Bet v1-like 274 448 - -
Accr5g00056 714 Gene3D - 263 441 IPR023393 -
Accr5g00056 714 SMART START_1 210 446 IPR002913 GO:0008289
Accr5g00056 714 CDD START_ArGLABRA2_like 205 445 - -
Accr5g00056 714 ProSiteProfiles 'Homeobox' domain profile. 23 83 IPR001356 GO:0003677
Accr5g00056 714 SUPERFAMILY Bet v1-like 468 675 - -
Accr5g00056 714 CDD homeodomain 26 81 IPR001356 GO:0003677
Accr5g00056 714 ProSitePatterns 'Homeobox' domain signature. 58 81 IPR017970 GO:0000981|GO:0006355
Accr5g00056 714 Gene3D - 8 89 - -
Accr5g00056 714 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 25 710 IPR042160 -
Accr5g00056 714 SUPERFAMILY Homeodomain-like 13 82 IPR009057 -
Accr5g00056 714 MobiDBLite consensus disorder prediction 1 33 - -
Accr5g00056 714 Pfam Homeodomain 26 81 IPR001356 GO:0003677
Accr5g00056 714 Pfam START domain 262 446 IPR002913 GO:0008289
Accr5g00056 714 ProSiteProfiles START domain profile. 201 449 IPR002913 GO:0008289
Accr5g00056 714 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00056 Accr-Chr5 1454325 1461276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00056 25 710 Homeobox Transcription Factor Family AT1G73360 39.776 6.22e-161 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr5g00056 START 7.2e-31 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00056 K09338 - twl:119995606 570.081