Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00044 ATGGCATCGTCCCAGGTTGAAATTGTTCTAACATCCCCTTTTGGTTGTGTTCTGAGAAAATATAATCATCGTGAGAGATTCAGGGAAACTGCTTCTTCTCGAGTTTCCTCATCATCACAAGCAGCAACCTTCCAGAACAGTGACAGAAGAAACTTTGTCGACAAAATCTGCAATAATAATGACGGATCACAAGTTGCGAACAACAACAATCTAGGATTCGCGAAGAAGGAGAATAAAGAAGACGAATCCTTATCCCCGTCCTCGAACAACAACAACAACTTTAACCCGAGGCAGCAATCACAGATTCTGGATCGATGGGCTGCAAGAAAAGCAAAAGAAATGGTATCAACGATTGAGACAGAAGCTGAGCTTTTGGAGAATATGGGTTCTAGTTCTAATACTTCTACTTCATCATCATCGTCAGAAACAATATTGAATAATCGTGGAGCTTCGTCTCTTGTTCAAATATGGGAAAAGAGATTAAATAACCTGAACCCATCATCACCACTCAAGTGCAATACAGTTACAAGCCGAACATCATCGTTTGGATCATCAGATGTTGGGGAAATATTCACGGTGGATGAAACATCATCGTCATCATCGTATTCAGATTGGGTGGTAGGTGATACAAATACTGAAGCTACGACATGTTCAACGCCAAAGGTGGCAGATCTCATAAAGAGATTGAAGGACAATAAGTATGAACAAAGTAATAATAACATCATGATGATGGGATCCTCGGGTTTGTCAAGTAGTAGATCGGAAACGAGCCCGGTGGTTCCTTCGCCTCGCATCCGAGGCCGGCGAGCATTTACAGATTTGCTGATGCAGATGGAACGTGACAGACATGGAGAGCTCAACAATCTGGCTCAGCTTGCTCCTGTTTCCAACTTTTCCCAAAGAGGTCGAGGTCGTATTCAGTCACTCATGCGGCTTAGATTATTGAAACGACACCATGAATCAACAATATATGAAGTGAATAGACCACCAAAAGGTTCCTCAATTATGCACTTGAGGGAAAGATTTAATGCAGAAGTGAAACAAAGAAGTACAACTGAGTCAGAAATAGTCAGTTCGAGAAATACCCGCCCTGATCAACACAAAAACCCTATGGGTCAGCACGGGTTGAATCCGATCCGGACGGACCGAGCTGTCAATGTGACGAATGACTGCCAAATTGCTAATGATTACTCATCAGCAGCGTGTGCTCCAAAACCAGGGTCTCAAACAAATGAAGAAGAAGAAGAAGAAGCTCATGCAAGTTCATCAGAAACAGTATTCTCAGAGGCTCAGAACATTATTGCTTCACAAGAAGTTGGCGAGACAAGTACTTGTTGCAATAATATGGTTGATTCATCAGACGCAAATCGTCATGAGACAAAAGATGAAGCAGACATGGCAGAGGTAAACCAGCTGGATAATATATATGGTGCCGAAGAAACTGAAATCATGAATAATAGTTATGTGGATGAAAGAAGAACGATGAATAATATTGAAGAAGATTATCATGAATATGCAAGTGAAAGCATCAATGATTATGATCATGATGACGAAGAAAATTATTACGATTGGATGAGTCCTATTGCTCGCCCTAGAAGCTATTGGGAAGATCGTAGACAAGCCTGGTACAAGGAGATGCTTGACACTGCTGCTTCTGATAATAAAGAAGAGATACGCCAACTTCTTGAACGAAGAAGAGTTTCAACTTTGCTTTCAAGTGACATGAGAGAAAGAATGGACAAATTGATGGAATATCACATAGGAACCCAAACACAATTTATGAGCAGTAGCCAAGAAGTTGATGAAGACAACAGTGGAGGTGGGAGCAGAATGGGGCAACTAGTGTCATTTTTGCAACAACACATACAGCGTCATGGCCGTAACCTTGAAGAAAAGGAAGAAGCTGAAAAACAAGAGGCACGAGAAGAGGAAGAAGAGAGCTTGATGAGTAATGGTGGTGTTTATAATGAAACCAGCTGTTATCAGCCGTTGTCGACACAGATTGTGAGTTCGTCTTCTCCAAACACGTCATCATGGAGCTATAGAGGGAACGAAGTCACCAGTGATGATTCTGATGAGGACAGAGTTGATGAGTCTGCTACATGTTCAATACAACCTTCTCCATGTCAATCTTTCTACCAAGATTGTCGCCAATCCTCCTCCACCATTAATCCTCATCCAACGGAAATGGATATCATATATGATATGAGGGGGCAGATGGAGCAACTATATAGAGAAATGGCCGAGATGAGGAAATCACTAAAGAGTTGCATAGATATGCAGATGATGCTACAGAAATCAATGAAGCGTGAAGTTAATAACACAGTTAGAGAAAAGAAGACGAAGAAGAAGAAGGGCAATGAAGAGAAGGGAGATGAGAAGAAAGGGAAATGCTGTATATGCTACGAGAAGGAAGTGGACTCAGTTTTGTATAGATGTGGGCACATGTGTACGTGTATTAAGTGTGCCAATGAGTTGCAATGGAACAGTGGCAAGTGCCCTATATGTCGAGCACCCATAGTTGATGTTGTTAGAGTTTATGTGAATTCTTAG 2553 0.4156 MASSQVEIVLTSPFGCVLRKYNHRERFRETASSRVSSSSQAATFQNSDRRNFVDKICNNNDGSQVANNNNLGFAKKENKEDESLSPSSNNNNNFNPRQQSQILDRWAARKAKEMVSTIETEAELLENMGSSSNTSTSSSSSETILNNRGASSLVQIWEKRLNNLNPSSPLKCNTVTSRTSSFGSSDVGEIFTVDETSSSSSYSDWVVGDTNTEATTCSTPKVADLIKRLKDNKYEQSNNNIMMMGSSGLSSSRSETSPVVPSPRIRGRRAFTDLLMQMERDRHGELNNLAQLAPVSNFSQRGRGRIQSLMRLRLLKRHHESTIYEVNRPPKGSSIMHLRERFNAEVKQRSTTESEIVSSRNTRPDQHKNPMGQHGLNPIRTDRAVNVTNDCQIANDYSSAACAPKPGSQTNEEEEEEAHASSSETVFSEAQNIIASQEVGETSTCCNNMVDSSDANRHETKDEADMAEVNQLDNIYGAEETEIMNNSYVDERRTMNNIEEDYHEYASESINDYDHDDEENYYDWMSPIARPRSYWEDRRQAWYKEMLDTAASDNKEEIRQLLERRRVSTLLSSDMRERMDKLMEYHIGTQTQFMSSSQEVDEDNSGGGSRMGQLVSFLQQHIQRHGRNLEEKEEAEKQEAREEEEESLMSNGGVYNETSCYQPLSTQIVSSSSPNTSSWSYRGNEVTSDDSDEDRVDESATCSIQPSPCQSFYQDCRQSSSTINPHPTEMDIIYDMRGQMEQLYREMAEMRKSLKSCIDMQMMLQKSMKREVNNTVREKKTKKKKGNEEKGDEKKGKCCICYEKEVDSVLYRCGHMCTCIKCANELQWNSGKCPICRAPIVDVVRVYVNS 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00044 850 PANTHER BNAC05G24000D PROTEIN 1 850 - -
Accr5g00044 850 ProSiteProfiles Zinc finger RING-type profile. 798 837 IPR001841 -
Accr5g00044 850 CDD mRING-HC-C3HC5_NEU1 795 847 - -
Accr5g00044 850 MobiDBLite consensus disorder prediction 398 426 - -
Accr5g00044 850 MobiDBLite consensus disorder prediction 78 99 - -
Accr5g00044 850 Coils Coil 108 128 - -
Accr5g00044 850 MobiDBLite consensus disorder prediction 624 648 - -
Accr5g00044 850 MobiDBLite consensus disorder prediction 84 99 - -
Accr5g00044 850 MobiDBLite consensus disorder prediction 771 793 - -
Accr5g00044 850 MobiDBLite consensus disorder prediction 345 379 - -
Accr5g00044 850 Pfam Zinc finger, C3HC4 type (RING finger) 795 842 - -
Accr5g00044 850 SUPERFAMILY RING/U-box 797 843 - -
Accr5g00044 850 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 772 849 IPR013083 -
Accr5g00044 850 MobiDBLite consensus disorder prediction 770 793 - -
Accr5g00044 850 MobiDBLite consensus disorder prediction 349 368 - -
Accr5g00044 850 MobiDBLite consensus disorder prediction 651 685 - -
Accr5g00044 850 Coils Coil 615 648 - -
Accr5g00044 850 SMART ring_2 798 836 IPR001841 -
Accr5g00044 850 MobiDBLite consensus disorder prediction 125 145 - -
Accr5g00044 850 MobiDBLite consensus disorder prediction 622 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00044 Accr-Chr5 1179801 1183940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00044 753 850 C3H Transcription Factor Family AT3G06140 30.612 1.29e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00044 - - pcin:129304584 830.476