Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g00028 ATGTATCAGCTAAACAGTGTTACTAGTTTAAGTGTACTAGGAAGCAACTCATTGGTACATAGTCAGCAATTTGATCGTGGTGGAAGTACAATGGACCTAGTCAATGGAGGGAATAGTCTCACCAACAATCCCAATCTGAGCTCAAAGCAAAGGCTACGCTGGACACATGAGCTCCATGAACGCTTTGTTGATGCTGTGGCGCAGCTTGGTGGGCCTGATCGTGCCACACCTAAAGGTGTCCTCAGAGTGATGGGTGTACAAGGCTTAACAATATATCATGTCAAAAGTCATCTGCAGAAATATCGTCTTGCTAAATACCTCCCTGACTCCTTATCTGATGGGAAAAAAGCTGACAAGAAAGAAACAGGGGATATGCTTTCCGATCTGGATGGTTCGCCAGGGATGCAGATTACTGAAGCACTAAAGCTGCAAATGGAGGTGCAGAAGCGATTACATGAGCAATTAGAGGTTCAGAGACAGCTACAGCTTCGGATTGAAGCCCAGGGCAAATACTTGAAGAAGATAATTGAAGAGCAACAGCGGCTCAGTGGTGTTCTTTCCCAAGCACCCGGCTCCGGGGATGCAGCCTCAGTGCCAGTTGACACTTGCCAAGACGCTGACAATAAGAATGACCCGTCAACCCCTGCCCCTTCATCTGAGTGCCCCCTTCAGGAAAAAGCTGCCAAGGAACGTGCTCTGGCAAAGAGTCTTTCAATGGACGAATCCTTTTCATCTCACAACGAACCATTAACACCAGATTCTGGCTGCCATGCTGGTTCCCCTACCAACAGCCCTAGAGGGAAGAGAATGACAAAAAAGCAGCGGGTGAGCACGGAGGGAGCATATTCTCAACCTGAGGTGGTGCTTCCACATCATATACTTGAGTCGAGCATGTCATCGAGTCAGTCATTAAACGGAGGGTTTCCTGCCGATGAGCCGTTTGATCCTTCACTAGGAATACCTACCAGAAGTAATGAGGAAATGGAGAAGGTTGGCGGCGGCAATCTGTAA 1011 0.4797 MYQLNSVTSLSVLGSNSLVHSQQFDRGGSTMDLVNGGNSLTNNPNLSSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSLSDGKKADKKETGDMLSDLDGSPGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSQAPGSGDAASVPVDTCQDADNKNDPSTPAPSSECPLQEKAAKERALAKSLSMDESFSSHNEPLTPDSGCHAGSPTNSPRGKRMTKKQRVSTEGAYSQPEVVLPHHILESSMSSSQSLNGGFPADEPFDPSLGIPTRSNEEMEKVGGGNL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g00028 336 MobiDBLite consensus disorder prediction 203 220 - -
Accr5g00028 336 Pfam MYB-CC type transfactor, LHEQLE motif 135 181 IPR025756 -
Accr5g00028 336 MobiDBLite consensus disorder prediction 29 48 - -
Accr5g00028 336 NCBIfam myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Accr5g00028 336 Pfam Myb-like DNA-binding domain 52 102 IPR001005 -
Accr5g00028 336 MobiDBLite consensus disorder prediction 186 336 - -
Accr5g00028 336 MobiDBLite consensus disorder prediction 238 267 - -
Accr5g00028 336 FunFam Myb family transcription factor 48 106 - -
Accr5g00028 336 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Accr5g00028 336 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 43 323 IPR044848 GO:0003700
Accr5g00028 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Accr5g00028 336 Gene3D - 48 107 - -
Accr5g00028 336 MobiDBLite consensus disorder prediction 112 133 - -
Accr5g00028 336 Coils Coil 138 158 - -
Accr5g00028 336 MobiDBLite consensus disorder prediction 112 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g00028 Accr-Chr5 816718 819579 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g00028 84 336 G2-like Transcription Factor Family AT2G01060 62.500 1.99e-96 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Accr5g00028 Myb_DNA-binding 2.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g00028 - - gmx:100786925 477.633