Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g02755 ATGTCGAATCCTAAGCATCATCGTCCCAATGCGGCCTATTCGTCCCCTCGGAATCACACTGCGAGTGCCGCGGAACCAGATGGACAATCCTCAATCAGAAGCCCGAAGTCTTACCCACCCGCGAACTCTCTATATGAGGACCTTGTTAGCAGTTCGGACCTTTTCTGGAGAAACCTTCAGGACTTTCACAAATCGTTAGGCACCAAATTAAAAGTTCCTGCTATTGGAGGAACCCCACTAGATCTTTATCACCTTTTTATTGAAGTTACTTCTCGTGGTGGGCTTGAAAAGGTAATTGGAGATCGTAAATGGAAGGAAGTGATTACAGTCTTCAAATTCCCAAACGCCGTAACCAGTGTATCATTTGCATTGCGCAAATACTATCAATCATTGCTTTATGACTTTGAGCAGGTTTATTATTTTCGGAAGCAAGTCCCTTCTTATGCAGTTCCTGATTCTGGCAGTAGGAGCATGTTGAGCTCGAATGAAGGGACTGCTTTGAATGATTTACCAGTTAGTACACCTGAGCAGCAGCTCGGCTCTTTGGTGCCTGGCACTATCGACTTGAAATTTGATGGTGGATATGTAGTCACTGTGAATCTGGGTTCTGAACAGCTGAAAGGTGTGCTGTATCATGTGCCTCACAATGCGTCCCTGAGTTCTGCATCCATACCTGTTCCTCAGAATCGAAAGAGACCAAAGATGGGTTCACAGGATCCATCTCGGCCCAAATCAAACAGGAGTGGCTACAATTTCTTCTTTGCAGAACACTATGCCAGGCTAAAGCCTTCATACTATGGACAAGAGAGAGCAATTAGTAAGAAGATTGGATTCTTATGGAACCATCTCACTGAAGCAGAAAGACAGATTTATCAGGAGAAAGGAAGGAGAGATAAGGAGAGATACAGGAATGAAATGGAGGAATACAAAGCATCCAATAATTCGACTCCTCAGTAG 957 0.4431 MSNPKHHRPNAAYSSPRNHTASAAEPDGQSSIRSPKSYPPANSLYEDLVSSSDLFWRNLQDFHKSLGTKLKVPAIGGTPLDLYHLFIEVTSRGGLEKVIGDRKWKEVITVFKFPNAVTSVSFALRKYYQSLLYDFEQVYYFRKQVPSYAVPDSGSRSMLSSNEGTALNDLPVSTPEQQLGSLVPGTIDLKFDGGYVVTVNLGSEQLKGVLYHVPHNASLSSASIPVPQNRKRPKMGSQDPSRPKSNRSGYNFFFAEHYARLKPSYYGQERAISKKIGFLWNHLTEAERQIYQEKGRRDKERYRNEMEEYKASNNSTPQ 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g02755 318 SUPERFAMILY ARID-like 50 149 IPR036431 GO:0003677
Accr4g02755 318 MobiDBLite consensus disorder prediction 294 308 - -
Accr4g02755 318 SUPERFAMILY HMG-box 234 313 IPR036910 -
Accr4g02755 318 CDD ARID_HMGB9-like 51 136 IPR045303 GO:0003677
Accr4g02755 318 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 29 315 - -
Accr4g02755 318 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 243 310 IPR009071 -
Accr4g02755 318 MobiDBLite consensus disorder prediction 294 318 - -
Accr4g02755 318 Gene3D - 37 150 IPR036431 GO:0003677
Accr4g02755 318 Pfam ARID/BRIGHT DNA binding domain 53 136 IPR001606 GO:0003677
Accr4g02755 318 CDD HMG-box_AtHMGB9-like 243 309 - -
Accr4g02755 318 Pfam HMG (high mobility group) box 243 310 IPR009071 -
Accr4g02755 318 Coils Coil 292 312 - -
Accr4g02755 318 MobiDBLite consensus disorder prediction 152 171 - -
Accr4g02755 318 MobiDBLite consensus disorder prediction 1 36 - -
Accr4g02755 318 MobiDBLite consensus disorder prediction 221 248 - -
Accr4g02755 318 SMART bright_3 50 141 IPR001606 GO:0003677
Accr4g02755 318 SMART ARID_2 46 136 - -
Accr4g02755 318 SMART hmgende2 242 311 IPR009071 -
Accr4g02755 318 Gene3D High mobility group box domain 227 318 IPR036910 -
Accr4g02755 318 ProSiteProfiles ARID domain profile. 49 140 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g02755 Accr-Chr4 57218049 57224562 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g02755 33 315 ARID Transcription Factor Family AT3G13350 51.027 4.68e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Accr4g02755 ARID 1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g02755 - - pcin:129299025 520.39