Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g02742 ATGGAGATGCAGCAGCTTCTGAGTATGGGGTTCCCGGATGAGCTTGCAGCCGAAGCCCTAGCTGCTACTGGTGGCAAATCCACCATTAAAGCCACCGAATGGATCTTAAACCACAAAGCCACTTCTTCTAACCATGTCTCTGACTCAAACCCTTCTCCAGTTCAGCCTAAACTCGATCGCTTTTTTCCGTTTCAATCCAAACCATCTTTTACAGTCACAGCCTCATCACAAGCAATTCAACAAGAGCAAGAAGATGCAGGTTTAGATTTAGAAGAATCAACACCAAACGTTAATCCGCCGTCGAAACGTCTCAAACTTTCACCGTCTAACACCAAACCTGCTTCTCCTGTCTTTCTGAATCATTTTCGTGGTCACAAGAGTGCTGATAATGCTTCTAAGTCCAAACCCCACGAGCCCTTATATGAGCGAATGCGTCCCAGAACCATTGATGATGTTATCGGTCAGGACCATCTGGTTGCTTCTAATTCGCTCCTCCGCTCCGCAATTGAACGCGGCCGTCTCCCTTCCATCATATTCTGGGGTCCTCCTGGTACAGGTAAGACCTCTATTGCTAAAGCCATAGTTAATTCTACAAATTCTTCTCAGAAACAACAATGCCCCTCTTATCGCTTTGTTTCGTTATCTGCTGTGACTAGTGGTGTTAAAGATGTGAGGGATGCGGTTGATGAGGCTAGGAAATTGAGAGCTAAGTGTAATCAAAGAACTGTTCTTTTTGTGGATGAGGTTCACAGGTTTAACAAGTCTCAACAGGACTCTTTTTTGCCGGTTATTGAAGATGGAAGTATTGTCTTCGTTGGAGCCACTACTGAAAACCCTTCCTTCCATTTGATTACACCATTGCTATCTCGGTGCCTTGTACTTACCCTAAACCCGTTGAAACCCCACCATGTTGAGATGATTCTAAAGAGGGCTGTGAATAATCTGGACAAAGGATTGGGGAAAAGCATTGGTTTACAAGTTGATGTACCTGAAGATGTAATTAGTTTTATAGCTAACAATTGTGATGGTGATGCTCGGGTGGCATTGAATGCATTGGAAATTGCAGCTGTTACAGCAGCTGCTCGGTCACAAGATAATAAGAAATCTGAGGATGTCAAAGAAACAGACAGCTTGGATGGTCAAATAAACCAAGAAAATAGAGCTGGCCCATCTTTTAATATTGTTACCCTGGATGATGCAAAAGAGGCGCTTCAGTGCAAGCACCTTGCTTATGATAAAGCTGGGGAAGAGCACTATAACCTAATTAGTGCACTGCACAAATCAATGAGGGGAAGTGATGCTAATGCGGCAATATATTGGTTAGCAAGAATGTTGGAAGGAGGGGAAGAGCCTCTTTACATTGCGCGGAGATTGATAAGGTTTGCAAGTGAGGACATTGGGTTGGCTGATCCGTCTGCTCTCAATCAGGCTGTTTCGTGTTACCAGGCCTGCCACTTCTTGGGTATGCCTGAGTGCAATGTGATTCTTGCACAGTGTGTTGCTTATTTGGCCTTAGCTCCTAAATCAATTGCTGTATATCGAGCAATGCAAGCTGCTCAGAAGGTCATCAGGGAATCAGTTGGACAGAATGAGGGAGTGCCTCTTCATCTTAGAAATGCACCAACTAAACTAATGAAGGAACTTGGCTACGGGAAGGGATACATATACACTCCTGATAATCCTTCTTTGACCCAGGACTACTTACCACCCTCACTAAATGGGTATAAGTTCCTTGATTGGCCTGACAGGAATACCTCTAACTGA 1764 0.4427 MEMQQLLSMGFPDELAAEALAATGGKSTIKATEWILNHKATSSNHVSDSNPSPVQPKLDRFFPFQSKPSFTVTASSQAIQQEQEDAGLDLEESTPNVNPPSKRLKLSPSNTKPASPVFLNHFRGHKSADNASKSKPHEPLYERMRPRTIDDVIGQDHLVASNSLLRSAIERGRLPSIIFWGPPGTGKTSIAKAIVNSTNSSQKQQCPSYRFVSLSAVTSGVKDVRDAVDEARKLRAKCNQRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCLVLTLNPLKPHHVEMILKRAVNNLDKGLGKSIGLQVDVPEDVISFIANNCDGDARVALNALEIAAVTAAARSQDNKKSEDVKETDSLDGQINQENRAGPSFNIVTLDDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDANAAIYWLARMLEGGEEPLYIARRLIRFASEDIGLADPSALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIAVYRAMQAAQKVIRESVGQNEGVPLHLRNAPTKLMKELGYGKGYIYTPDNPSLTQDYLPPSLNGYKFLDWPDRNTSN 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g02742 587 CDD HLD_clamp_RarA 299 374 - -
Accr4g02742 587 CDD AAA 153 291 - -
Accr4g02742 587 FunFam Putative AAA family ATPase 405 508 - -
Accr4g02742 587 MobiDBLite consensus disorder prediction 364 380 - -
Accr4g02742 587 Gene3D - 2 40 - -
Accr4g02742 587 MobiDBLite consensus disorder prediction 363 386 - -
Accr4g02742 587 Gene3D - 405 508 - -
Accr4g02742 587 Pfam MgsA AAA+ ATPase C terminal 431 580 IPR021886 -
Accr4g02742 587 MobiDBLite consensus disorder prediction 94 112 - -
Accr4g02742 587 FunFam Replication-associated recombination protein A 130 298 - -
Accr4g02742 587 Pfam UBA/TS-N domain 4 35 IPR015940 -
Accr4g02742 587 MobiDBLite consensus disorder prediction 76 112 - -
Accr4g02742 587 Coils Coil 221 241 - -
Accr4g02742 587 SMART AAA_5 173 299 IPR003593 GO:0016887
Accr4g02742 587 Gene3D - 299 374 - -
Accr4g02742 587 Pfam ATPase family associated with various cellular activities (AAA) 177 293 IPR003959 GO:0005524|GO:0016887
Accr4g02742 587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 371 IPR027417 -
Accr4g02742 587 Pfam AAA C-terminal domain 326 430 IPR032423 -
Accr4g02742 587 Gene3D - 127 297 IPR027417 -
Accr4g02742 587 Gene3D - 509 587 - -
Accr4g02742 587 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
Accr4g02742 587 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 1 585 - -
Accr4g02742 587 FunFam AAA-type ATPase family protein 299 375 - -
Accr4g02742 587 SUPERFAMILY UBA-like 3 39 IPR009060 GO:0005515
Accr4g02742 587 SUPERFAMILY post-AAA+ oligomerization domain-like 415 584 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g02742 Accr-Chr4 56792090 56793853 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g02742 139 376 Core DNA Replication Machinery Family AT1G77470 25.714 6.28e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g02742 K07478 - qsu:112015639 784.252