Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g02730 ATGTCAACTACCGCAAAACCTCCATGCGCGGCTTGCAAGATTCAGAGGAGGAAATGCACACCGGAATGCATGTTTGCGCCATATTTTCCAGCAGATAATCCTCGGAAGTTTGCTTGCGTGCGCAAGGTTTTTGGTGCGAGCAATGTGACCAAGATTCTGAATGACGTTAGCGTCGTCCAGCGTGAGGATGCCGTCAGATCGTTGGCTTATGAAGCGGATGCCCGCCTTCAGGACCCTGTATATGGCTGTGTTGGCATCATCTCCGGTCTCCAGCTTCGGCTAAATCAGCTTCAGAGTGAACTCATCGACGTCAGAAAAGAACTTGCTGCCTATATGGGTCAACAGGCCTTACTTCCTAGCCACGTAACGGGATTCAGTCGGCAGGAGCTTTTGACTTTCAATGTCAGTGGCGACGGAAGCCCAGGCGGCTATGGTGGATACCCGCTGGCCGGAACACTTGTCTCTCATCAGGTTGAAACACATCATCAGGTTGATATGCATTCTCAGCAAAGGATGTTGTCACAGAAAAGCGAGGGACGTAGAAATATGGGTCCATATACCCGTGCTTTATATGGAATCTGA 582 0.5017 MSTTAKPPCAACKIQRRKCTPECMFAPYFPADNPRKFACVRKVFGASNVTKILNDVSVVQREDAVRSLAYEADARLQDPVYGCVGIISGLQLRLNQLQSELIDVRKELAAYMGQQALLPSHVTGFSRQELLTFNVSGDGSPGGYGGYPLAGTLVSHQVETHHQVDMHSQQRMLSQKSEGRRNMGPYTRALYGI 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g02730 193 Pfam Lateral organ boundaries (LOB) domain 8 103 IPR004883 -
Accr4g02730 193 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 163 - -
Accr4g02730 193 Coils Coil 87 114 - -
Accr4g02730 193 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g02730 Accr-Chr4 56402818 56403399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g02730 4 119 AS2 family AT5G66870 65.517 5.32e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Accr4g02730 LOB 4.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g02730 - - gmx:100812543 176.407