Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g02618 ATGGAGGTTGTTTTGGCCGCGTCCTCTGTTGATGCTGATATTGGCTGCTGGGACCTTCAGTCAGGGGCTGAGCAGCTGCGCTATAAAACTTGTGCTGCCCCATCACATGGCCTCATTAGTGTTGGTAGTCGCTTCCTTGCATCTTCTCAGATCCGAGATTCCTCTGCTACTGCTGGTCTGGTTCTCTACTGGGACTGGTCCAAGCCTCAAGTAGAAGCCAAGAGCTTTCCAGCTGAGCCAATCAGGCCTCTTGCTGCTAATCACTCAGGCACTTATATAGCTGGTGGTGGTTTATCAGGTGACATATACTTTTGGGAGGTTGAAACTGGCAGATTGCTTAAGAAGTGGCATGCTCATTATATGGGTGTAACTTGCCTAGTATTTTCTGAGGATGACTCACTATTGATATCTGGTTCAGAAGATGGATGCATACGAGTTTGGTCCTTGTTCATGATATTTGATGATTTGAAAAGGAAGGAAGCAGGTCATCTTTATGAGCATAGTTTTTCAGAGCACCCCTTAGAAGTAACTGACATTGTAATTGGTTATGGAGGGTGCAATGCGATTATAATTTCTGCTGCAGAGGATAAGACCTGTAAGGTTTGGAGCTTATCTAGAGGAATGCTACTAAGAAATATCGTATTCCCTTCAGTGATTGATGCAATTGCATTGGATCCTGCTGAACGTGTCTTTTATGCTGGCAGTAGAGATGGAAAAATATTTATTGTCGCTCTTAACACTGAAAGGATGTTTAGTCATAATCATGATATGCATATCATTAGTTCATTCTCTAATCTCAGCAAAGCAGTTACTTGCTTAACATATAGTGCAAGTGGGAATGTGTTAATCTCTGGATCAGAAGATGGAATGGTTCGGCTTTGGAACACAAAAGAAAAACATGCTTTGGAACGCACACTCAAATATGCTAAAGGGCCTGTAAATAATATTCTTGTGGTTAGAAGACAGCTTGACTCAAGCAAGTCTATGTCTTCAACTTTACAATCACCATCCTCAAGAAGGCAGGGATCTTTACTGCCCCCTCCATTGGAAAAATACTCAAATTCAACAACAGATGAAGATTCAGATGTTAAAACTATTGTTAACCTCCATGATGGAAGGAGCGGTGTGGATGTTTCATACATGTCTTCGCAGGTGATATTTAATCAAATCAAGGAATTTCAGAATCGGGGCTCCTCTGCTTCTGAAATGGAGATGGAGAGGCTAAAAATGGATTGCAGGAGGTCTGGTCAGATGGTTGACCGATTTAAGAAAATGTATGAAGATATGCTAGAGTTCTATGAAGACGACTTCTTGAAAGAGGGTCAAACTAAAACTTGA 1338 0.417 MEVVLAASSVDADIGCWDLQSGAEQLRYKTCAAPSHGLISVGSRFLASSQIRDSSATAGLVLYWDWSKPQVEAKSFPAEPIRPLAANHSGTYIAGGGLSGDIYFWEVETGRLLKKWHAHYMGVTCLVFSEDDSLLISGSEDGCIRVWSLFMIFDDLKRKEAGHLYEHSFSEHPLEVTDIVIGYGGCNAIIISAAEDKTCKVWSLSRGMLLRNIVFPSVIDAIALDPAERVFYAGSRDGKIFIVALNTERMFSHNHDMHIISSFSNLSKAVTCLTYSASGNVLISGSEDGMVRLWNTKEKHALERTLKYAKGPVNNILVVRRQLDSSKSMSSTLQSPSSRRQGSLLPPPLEKYSNSTTDEDSDVKTIVNLHDGRSGVDVSYMSSQVIFNQIKEFQNRGSSASEMEMERLKMDCRRSGQMVDRFKKMYEDMLEFYEDDFLKEGQTKT 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g02618 445 SUPERFAMILY WD40 repeat-like 5 318 IPR036322 GO:0005515
Accr4g02618 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 149 IPR001680 GO:0005515
Accr4g02618 445 Gene3D - 1 214 IPR015943 GO:0005515
Accr4g02618 445 MobiDBLite consensus disorder prediction 327 360 - -
Accr4g02618 445 PANTHER WD-REPEAT PROTEIN 18 2 436 IPR045227 -
Accr4g02618 445 Pfam WD domain, G-beta repeat 111 148 IPR001680 GO:0005515
Accr4g02618 445 Pfam WD domain, G-beta repeat 267 295 IPR001680 GO:0005515
Accr4g02618 445 Gene3D - 215 333 IPR015943 GO:0005515
Accr4g02618 445 FunFam Protein ROOT INITIATION DEFECTIVE 3 1 242 - -
Accr4g02618 445 SMART WD40_4 206 244 IPR001680 GO:0005515
Accr4g02618 445 SMART WD40_4 109 148 IPR001680 GO:0005515
Accr4g02618 445 SMART WD40_4 256 295 IPR001680 GO:0005515
Accr4g02618 445 SMART WD40_4 69 106 IPR001680 GO:0005515
Accr4g02618 445 SMART WD40_4 162 203 IPR001680 GO:0005515
Accr4g02618 445 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Accr4g02618 445 PRINTS G protein beta WD-40 repeat signature 135 149 IPR020472 -
Accr4g02618 445 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Accr4g02618 445 MobiDBLite consensus disorder prediction 327 354 - -
Accr4g02618 445 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 116 149 - -
Accr4g02618 445 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 295 - -
Accr4g02618 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g02618 Accr-Chr4 52931869 52936128 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g02618 88 298 U-box Gene Family AT1G04510 22.791 9.99e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g02618 K14829 - qsa:O6P43_016055 610.142