Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g02560 ATGAGAAGAGGCAGAGAGCTTCTTCGACTCTATTCTTCACTTCGCTGTGGAACTTCGAAATCACCATCTTCTGCTTCTGCTTCTCGTCGGCTTATTATTTCCTTCAGTTCTTCTTTCTCTTCAAACCCTTGTGATGAGGACGATAAGAGATCACCCAAGTCTCAAAGGGATTCGATGCTTTTAGAAAAATTTAGACTCAGAAAACTTAAAGGTACTCCTACATCTTCACAAAGTAGCCCCCAAGCATCATGTTCAACTTCAGAGAAGGTAGCTGAAAAGGATTTGAAGAATGAGGATGAATCCTCTAAGGTAGTGAACAATTTTAAGGAGTTAGGTTTGTGTGAGGAGCTTATTATGGTTCTGGAGAAACTAGGGCTTCTTGTTCCTACTGAGATTCAATGTGTAGGAGTTCCTGCTGTTTTGGAAGGGAAAAATGTGTTGATGAGTTCAGTCTGTGGGCCTGATAGGATTTTGGCCTACTTGTTGCCCCTTATACAGCTGTTGAGACAAGATATGAAGTTTTCCCATTCAAATTTGCGGCATCCTCGGGCCATTGTGCTTTGTGCCACAGAGGAGAAAGCTGAACAGTGCTTTAATGCTGCGAAATATATCATCGATCAAGTAGAACCAAAATCTTCAAAGGATGATTCACCGAATACTGAGAAGTCAGATGTTTCAATTGGCCTTGTAATTGGACCTCCCAGTGAGATTCTTCAGTACATTGAAGAGGGAACAGTTATTCCTGAAGAAATAAGATATTTGGTAGTGGATGATGCAGAGTGCATGTTTGATAGTGGGCTTGGCCTCAAAGTTCGCAAGATTCTCAGACACTTACCAGATTATACTTCAGAGTTACCTACCAAAGGGCTGCAAACTGTTTTGGTTGCTTCAACAATAACAGAGGTGTTGGGTGAAGAGTCTCCCGTTATAAAGCGCCTGGTGGATAATCATGCTGGACATGTCTCTGCAATGTTGTTAGAAATGGATGGTGCACAAGAAGTCTTTCAACTCACAGAATCCTTAGATGCTTTAAGGCAAAAGATGACAGAGGCCATGAATTCCTTTCTTAAATGA 1074 0.4153 MRRGRELLRLYSSLRCGTSKSPSSASASRRLIISFSSSFSSNPCDEDDKRSPKSQRDSMLLEKFRLRKLKGTPTSSQSSPQASCSTSEKVAEKDLKNEDESSKVVNNFKELGLCEELIMVLEKLGLLVPTEIQCVGVPAVLEGKNVLMSSVCGPDRILAYLLPLIQLLRQDMKFSHSNLRHPRAIVLCATEEKAEQCFNAAKYIIDQVEPKSSKDDSPNTEKSDVSIGLVIGPPSEILQYIEEGTVIPEEIRYLVVDDAECMFDSGLGLKVRKILRHLPDYTSELPTKGLQTVLVASTITEVLGEESPVIKRLVDNHAGHVSAMLLEMDGAQEVFQLTESLDALRQKMTEAMNSFLK 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g02560 357 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 302 IPR027417 -
Accr4g02560 357 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 106 134 IPR014014 GO:0003724
Accr4g02560 357 MobiDBLite consensus disorder prediction 70 96 - -
Accr4g02560 357 Gene3D - 306 356 - -
Accr4g02560 357 Gene3D - 70 305 IPR027417 -
Accr4g02560 357 MobiDBLite consensus disorder prediction 70 88 - -
Accr4g02560 357 SUPERFAMILY PABC (PABP) domain 301 353 IPR036053 GO:0003723
Accr4g02560 357 MobiDBLite consensus disorder prediction 43 57 - -
Accr4g02560 357 SMART poly_2 295 355 IPR002004 GO:0003723
Accr4g02560 357 MobiDBLite consensus disorder prediction 37 57 - -
Accr4g02560 357 Pfam Poly-adenylate binding protein, unique domain 308 353 IPR002004 GO:0003723
Accr4g02560 357 Pfam DEAD/DEAH box helicase 130 300 IPR011545 GO:0003676|GO:0005524
Accr4g02560 357 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 44 301 - -
Accr4g02560 357 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 137 317 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g02560 Accr-Chr4 51085541 51088134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g02560 78 279 Eukaryotic Initiation Factors Gene Family AT3G13920 21.963 2.65e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g02560 - - gmx:100800575 342.043