Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g02516 ATGGAAGAAGAGGCTGATGTGGGAGTCTTGCAGTCTCAGAACCAGCAGCTTGTTCAACAGATAGACCTCCAAAAACAGGCGTTGCATGACCTTGAAGTAAAAATTGGAGATTTAAAATACAGGCAAAATTCATATGATGACATGATAATTGCAGTAAACGAACTCTGGAGTCAGTTGGTTGATGATCTGATCCTTCTTGGAATACGAGCTGGTGGAGGCCAAAAGGCATTTAAAAATTTCGAGCACCCTAGTAATCCTCAAGATTCACTTTCTTTGTGTCCAGTGGAGGATATCTTCCTTTCCAGATTAACACAGAAAGATTTCATTGAAGCTAACAATCATGATGAGGTCATTACCTTTGTTGAGGAAGCACTTGCTCTGCGTCAGTCATCTACCAGGGAGTTATTGAAACTTCTTGAAGATACTATTGATGCTCAGATTGAAAGAACTTACTGTATTACCCAGGGTTTGGAGGGGCCAGTTTCAGAAGATGCTATCATTCAGATGTCTAAAATTGATGATATGATGAAAGAGGAGGCAAACAATTTACGTGAAGTAATCGATGCTCTCCATGTCAAGCATAATGATTATGCTGTTGCTATTGAAAATTATATCAGCTGCCACTTAGTGGATCAATCTGAGATTAAACGTTTAGCAGGTGAACTTGATGAAACCATCGGTGAACTTGAAGAGAGTAGGAGAAAATTAGTCAATCTGAAAATGCAGAAAGATGCAGCAATAGGGATGCAGTCGCCTGGTTCGGATGCAGTTAATGGGACTTTGTCTCCTGAAAAGCCTTCAGACAAGACAATGGGTCTGCGGGAGTTGAAAGATTCGATTGAGGAAGCAAAGATAGTGGCAGCTGACCGTCTTTCAGAGCTTCAAGAAGCACAGGAAGACAATCTGACCTTGAGAGGGCATTTGCAAGATCTTCAGAATGAATTGACCGATGACAAGTATGTATATTCATCCCGACTATATTCTTTGGTAAATGATCAACTTCAACATTGGAATACTGAATTGGAGCGGTATAAAGCATTGACAGAGTCTCTGCAGGCTGAAAGGGTCCATGTTATGAAATGGGAAAAGGAACTGAACTCAAAATTGGAGTCTGCAGATACTGCAAGGCTTACAGTTGACAATTCTGACGGTAGGATTGAAGAGCTAGAGCTTCAGTTGCAGAAGTGTACTATTGAAAAGAACGATATTGAAATAGAGATGGAAGAAGCTATACAGGATACTGGGAGAAAAGACATTAATTCTGAGTTTCATGTCATGGCTTCAGCCTTATCTAAGGAAATGGGTATGATGGAAGCTCAATTGAAACGATGGAAGGATGCAGCTCATGAGGCAGTTTCTTTACGTGAGAAAGCACATTCACTAAGATCTTTGTTAAGTGGGAAGTCAAGTGAAATAAAAAGCTTAGCAAACAAATGTTCTGAGCAAGCCGTGGAGATAAAGTCTTTAAAAACATTGATTGAAAGGCTGCAGAAGGAAAAGGTGGAATTACAATACTTTTTGGACTTGCATGGGCAGGAGAATCATGAAAAAAGAGGTTTGGTAGAAATCAGAGAATCAGAAAGTAAAGCTCTCGCTCAAGCTGAAGTACTGAAAAATGCTTTAGATGAGCATGGTCTAGAGTTGAGGGTAAAAGCTGCCAATGAAGCTGAAGCTGCTTATGAACAAAGGCTTTGTGCAGCAGAAGCGGAAATAGAGGATCTAAAGGCCAAACTGGAAGCTTCTGAAAGAGATATTTTGGAGCTGACTGAGGCTATTAAAGTCAAAGATGCTGAGTCAGAGGCTTATATATCTGAAATTGAGACTATTGGACAAGCCTATGAAGATATGCAGACGCAGAACAAACATCTATTGCAGCAGGTGACTGAGAGGGATGACTATAATATTAAGCTTGTATCAGAAAGCGTAAAGACAAAACAGGCACATAGCATCTTACTTTGTGAGAAGCAGGCCTTAGCAAAGCAGCTTCAACAAATTAACACTTCAATAGAAAGTTTAAAGATGAGGATTACAATTAGTGAAGATCAGATGAAAGCTCTTATATCAGAAGCTACTAAATCTACTCAAGAGGAAAAACACCTTGCAGTTACCCTGGAGTCTGCAAAGTGGGAATTGGCTGATGCTGAAAAGGAGTTGAAGTGGCTTAAGTCTGCTGTTACTTCTTCTGAGAAAGAGTTTGATCAAATTCAGAAAGACTTGGAAGCTACCCAAATCGAGTTGGATGCTGAAAGGAGTTCCAGAAAGAAGCTTGAAGAAGAACTCAAGGAATTAAACAGCAAAATTGATGAGCTGAGTTCTGAAACTGGAGAGACTGCAATACAAAAACTACAAGATGAAATTAGGGTTTGCAAGAACATGATCAAATGCACTGTCTGTTCTGATCGTCCAAAGGAGGTTGTGATTGTGAAGTGTTATCATCTGTTTTGCAATCCTTGTATCCAAAGGAACTTGGAACTCCGTCATCGCAAGTGTCCTGCCTGTGGCACTGCTTTCGGTCAGAGTGATGTTCGGTTCGTGAAAATATGA 2544 0.4025 MEEEADVGVLQSQNQQLVQQIDLQKQALHDLEVKIGDLKYRQNSYDDMIIAVNELWSQLVDDLILLGIRAGGGQKAFKNFEHPSNPQDSLSLCPVEDIFLSRLTQKDFIEANNHDEVITFVEEALALRQSSTRELLKLLEDTIDAQIERTYCITQGLEGPVSEDAIIQMSKIDDMMKEEANNLREVIDALHVKHNDYAVAIENYISCHLVDQSEIKRLAGELDETIGELEESRRKLVNLKMQKDAAIGMQSPGSDAVNGTLSPEKPSDKTMGLRELKDSIEEAKIVAADRLSELQEAQEDNLTLRGHLQDLQNELTDDKYVYSSRLYSLVNDQLQHWNTELERYKALTESLQAERVHVMKWEKELNSKLESADTARLTVDNSDGRIEELELQLQKCTIEKNDIEIEMEEAIQDTGRKDINSEFHVMASALSKEMGMMEAQLKRWKDAAHEAVSLREKAHSLRSLLSGKSSEIKSLANKCSEQAVEIKSLKTLIERLQKEKVELQYFLDLHGQENHEKRGLVEIRESESKALAQAEVLKNALDEHGLELRVKAANEAEAAYEQRLCAAEAEIEDLKAKLEASERDILELTEAIKVKDAESEAYISEIETIGQAYEDMQTQNKHLLQQVTERDDYNIKLVSESVKTKQAHSILLCEKQALAKQLQQINTSIESLKMRITISEDQMKALISEATKSTQEEKHLAVTLESAKWELADAEKELKWLKSAVTSSEKEFDQIQKDLEATQIELDAERSSRKKLEEELKELNSKIDELSSETGETAIQKLQDEIRVCKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g02516 847 Coils Coil 704 773 - -
Accr4g02516 847 Coils Coil 479 499 - -
Accr4g02516 847 Coils Coil 334 354 - -
Accr4g02516 847 Coils Coil 655 689 - -
Accr4g02516 847 PANTHER RING FINGER PROTEIN-RELATED 5 847 IPR013956 GO:0004842|GO:0010390
Accr4g02516 847 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 776 846 IPR013083 -
Accr4g02516 847 MobiDBLite consensus disorder prediction 249 270 - -
Accr4g02516 847 Coils Coil 564 598 - -
Accr4g02516 847 Pfam Zinc finger, C3HC4 type (RING finger) 794 836 - -
Accr4g02516 847 Coils Coil 215 242 - -
Accr4g02516 847 SUPERFAMILY RING/U-box 794 838 - -
Accr4g02516 847 ProSitePatterns Zinc finger RING-type signature. 810 819 IPR017907 -
Accr4g02516 847 CDD RING-HC_Bre1-like 787 843 - -
Accr4g02516 847 Gene3D - 651 775 - -
Accr4g02516 847 Coils Coil 280 314 - -
Accr4g02516 847 SMART ring_2 795 833 IPR001841 -
Accr4g02516 847 Coils Coil 14 34 - -
Accr4g02516 847 Coils Coil 379 413 - -
Accr4g02516 847 ProSiteProfiles Zinc finger RING-type profile. 795 833 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g02516 Accr-Chr4 48979267 49010925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g02516 769 842 RAD5 or RAD16-like Gene Family AT5G05130 27.711 9.60e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g02516 K10696 - qsa:O6P43_020782 1222.99