Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g02439 ATGGAGACACAGCCTCAGCAACCATGTCAAGAGGAAGAGGAAGGTGAGCTGCTAGGTCGGGGAACAACACTTTCTGGCCAATCAATTTCCACAAGTAAAAGTGTAGGGTCTCCAACCAGTAGAAGTGAGCAAACAAAGGCTACACCGGCCAGTGATAGCACTTTTCTAAGACTAAATCAACTTGACATCCATGGTGATGATGCTGGATCTCAGGGAGCAGTTGCTGGCAAGAAGAAAAAGAGAGGCCAGCCTGCAGTTGGAGGTGACAAGAGTGGAAGAGGGCTCCGCCAATTTAGCATGAAAGTGTGTGAGAAGGTGGAAAGTAAGGGAAGAACCACTTACAATGAGGTTGCAGATGAACTTGTGGCTGAATTTGCCGACCCAAGCAGTAGTGTTTCATCTCCTGATCAGCAACAATATGAGGAGAAAAACATTCGTCGTAGGGTTTATGATGCTTTGAATGTTCTCATGGCAATGGATATAATTTCCAAGGATAAAAAGGAAATTCAATGGAAGGGTCTCCCTCATACAAGTCTGAACGATATTGAAGAATTAAAGACAGAGCGCCTTCAGCTTAGGAATCAGATTGAAAAGAAAGCTGCCTACCTGCAGGAGCTGGAGGAGCAATACATCGGCCTTCAGACTCTCATACAACGAAATGAGCAATTATATGCCTCAGGAAATGCTCCCAGTGGAGGTGTAGACTTGCCTTTTATTCTTGTACAGACTCGCCCCCATGCGACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTACATTTTGATTTCAATAGCGCTCCTTTTGAGCTACATGATGACAACTATGTCCTCAAGGCAATGAAATTTTGTGAGAGACCACAGAGTGATAATTTGACACAAAATCTTGTGGACGGTGGTGAAGGTTCTAGCTTGTCAGGCTTGTATCAGGGGCAGGTCACTCCTTCAGTGTCAAACCAACCGGTTAGAAATCCAACCTCGCCGCCTCTCCCTGGAATATTGAAGGCAAGAGTTAAGCATGAGCATTGA 1029 0.45 METQPQQPCQEEEEGELLGRGTTLSGQSISTSKSVGSPTSRSEQTKATPASDSTFLRLNQLDIHGDDAGSQGAVAGKKKKRGQPAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSSSVSSPDQQQYEEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPHTSLNDIEELKTERLQLRNQIEKKAAYLQELEEQYIGLQTLIQRNEQLYASGNAPSGGVDLPFILVQTRPHATVEVEISEDMQLVHFDFNSAPFELHDDNYVLKAMKFCERPQSDNLTQNLVDGGEGSSLSGLYQGQVTPSVSNQPVRNPTSPPLPGILKARVKHEH 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g02439 342 FunFam Transcription factor-like protein DPB 179 303 - -
Accr4g02439 342 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667|GO:0006355
Accr4g02439 342 SUPERFAMILY E2F-DP heterodimerization region 179 294 IPR037241 -
Accr4g02439 342 SMART DP_2 180 340 IPR014889 -
Accr4g02439 342 MobiDBLite consensus disorder prediction 293 321 - -
Accr4g02439 342 SUPERFAMILY "Winged helix" DNA-binding domain 93 174 IPR036390 -
Accr4g02439 342 Pfam Transcription factor DP 181 295 IPR014889 -
Accr4g02439 342 PIRSF Txn_factor_DP 2 342 IPR015648 GO:0005667|GO:0051726
Accr4g02439 342 Gene3D - 86 178 IPR036388 -
Accr4g02439 342 MobiDBLite consensus disorder prediction 1 93 - -
Accr4g02439 342 PANTHER TRANSCRIPTION FACTOR DP 22 295 IPR015648 GO:0005667|GO:0051726
Accr4g02439 342 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667|GO:0006355
Accr4g02439 342 Coils Coil 182 223 - -
Accr4g02439 342 MobiDBLite consensus disorder prediction 21 58 - -
Accr4g02439 342 MobiDBLite consensus disorder prediction 293 342 - -
Accr4g02439 342 CDD DP_DD 178 281 IPR014889 -
Accr4g02439 342 Gene3D Transcription factor DP 179 312 IPR038168 -
Accr4g02439 342 FunFam Transcription factor-like protein DPB 85 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g02439 Accr-Chr4 44342290 44348312 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g02439 91 282 E2F-DP Transcription Factor Family AT5G02470 55.959 3.37e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Accr4g02439 DP 1.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g02439 K04683 - zju:107414839 551.206