Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g02377 ATGAACAACAATCTGGCATTTCTTGCAAGAACTGTTGCAACAAAGTTTCAAAGTCCATCTCCATTGCGAATCTATTGTTCATCATCCTCAGAGTCTTCTCCTCCTTCCAGCAATAAACTCTTTGTTGGAGGGTTGTCATGGTCCGTGGGTGAGAAAACCCTCAAAGATGCTTTCTCTTCATTTGGTGAAGTCACTGAAGTGAGGATAGCATATGATAAAGACAGTGGTAGGTCTAGGGGGTTTGGCTTTGTCATATTTTTAGATGAAGATAATGCCAAAACTGCAAAAGACGCAATGGATGGCAAGGCACTCTTAGGAAGACCCTTGAGAATAAATTTTGCTCTTGAGACGGTCCGTGGAGGGCCTGTTGTAGTTCCTCGGATCTCAGATATGGGACACATAAATAGACGTAGGACTTGA 420 0.4286 MNNNLAFLARTVATKFQSPSPLRIYCSSSSESSPPSSNKLFVGGLSWSVGEKTLKDAFSSFGEVTEVRIAYDKDSGRSRGFGFVIFLDEDNAKTAKDAMDGKALLGRPLRINFALETVRGGPVVVPRISDMGHINRRRT 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g02377 139 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 15 117 - -
Accr4g02377 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 110 IPR000504 GO:0003723
Accr4g02377 139 SMART rrm1_1 39 112 IPR000504 GO:0003723
Accr4g02377 139 Gene3D - 25 137 IPR012677 -
Accr4g02377 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Accr4g02377 139 SUPERFAMILY RNA-binding domain, RBD 27 120 IPR035979 GO:0003676
Accr4g02377 139 CDD RRM2_NsCP33_like 39 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g02377 Accr-Chr4 40612201 40614534 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g02377 36 95 C2H2 Transcription Factor Family AT2G19380 40.000 4.31e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g02377 - - cave:132182736 194.126