Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g02373 ATGCTGGCCTCTTATTCTCCAAAGATGACAACCAAAGTTCTTCTAGCTGGTTCTCTGCAACCAGTAATTATATTGCTTAGATCTTGCTGTTTCAAGTGTCAAAAAGAAGCAGCTCGTTTAGTTGGTATATTTGCAAGGACAGATTCTGATTGCAAGGTTCACATTGCTCAAAGAGGGGCTATACCGCCACTGATTGACATGCTTAAGTCTCCACATGCAGAGCTTCGAGAAATGTCAGGTTTTGCAATTGCAACACTTGTTGAGGACCCACACAATCAAGTTGGTATTGCTTATAATGGAGGTATAGAACCTTTACTCAACCTTCTTTCCTCCAAGAAAAAAACTGTCCAACATAATGCAACCTTTTGTGTGTACCGTCTTGCTGAAAATGAGGACAATGTTGTGGATATTATTAAGTTGGGCGGTGTTCAAAAACTATTGGATGGAGATTTCACAGCTAAAGTGCTGAAACAGCTGTTGCATCTTATACGATTCGGAGAAAAGGCTGTTCAAAGTTATGTGGTTTTGGCTCTTGCTCATTTATGTTCCTCTGATGATCAGAAAATTATTTTTGTTGACAACAATGGACTTGCCTTCCTAGTAGATCTGCTAACATCTAGAAATCTTAATAAAAAACGTGAGGCTTCAATGGCACTTTACTCTTTGGCGATCAGAAGCACATCTATCTCTCCCTTAGATACTACTCCTTCGTCCATGACTCCTCAGGTATATTTATGCGAGCGATATGTTAACAATCCTGCGCTTTCTGATGTCACCTTTTTAGTTGAAGGAAAACGGTTCTATGCTCATCGAATTTCTTTGCTTGCTTCCTTTGATGCGTTTCGAGCAATGCTTGATGGTGTTTACCGGGAGAAGGAAGCGAAAGATATACCGATTCCAAACATTAAATGGGTTGTCTTTGAATTGATGATGAGATTTATCTATACAGGAACTGTAGATGTCAATTTGGATCTTGCTCAAGATCTCCTAAGAGCTGCTGATCAGTATCTTGTGGATGGTCTTAAGCGATCTTGTGAATGTGTAATAGCTCAGGATATTTCCTTGGGAAATGTTTCTCAATTGTATGAGTTATCAGATTCAATGAATGCTATGTCATTGAGGCGAGCATGTATATTGTTTTTGTTGGAGCAATTTGAGAAATTGAGTGTCAAACCATGGTATAACTGCCTGCTGCGTCGTGTCGCCCCAGATATAATCGAATTTTTCAGAAGTTTACTTGGGAGTGGAATAGATAAGAAATAG 1263 0.3935 MLASYSPKMTTKVLLAGSLQPVIILLRSCCFKCQKEAARLVGIFARTDSDCKVHIAQRGAIPPLIDMLKSPHAELREMSGFAIATLVEDPHNQVGIAYNGGIEPLLNLLSSKKKTVQHNATFCVYRLAENEDNVVDIIKLGGVQKLLDGDFTAKVLKQLLHLIRFGEKAVQSYVVLALAHLCSSDDQKIIFVDNNGLAFLVDLLTSRNLNKKREASMALYSLAIRSTSISPLDTTPSSMTPQVYLCERYVNNPALSDVTFLVEGKRFYAHRISLLASFDAFRAMLDGVYREKEAKDIPIPNIKWVVFELMMRFIYTGTVDVNLDLAQDLLRAADQYLVDGLKRSCECVIAQDISLGNVSQLYELSDSMNAMSLRRACILFLLEQFEKLSVKPWYNCLLRRVAPDIIEFFRSLLGSGIDKK 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g02373 420 Gene3D - 1 246 IPR011989 -
Accr4g02373 420 SUPERFAMILY ARM repeat 11 224 IPR016024 -
Accr4g02373 420 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 100 142 IPR000225 GO:0005515
Accr4g02373 420 ProSiteProfiles BTB domain profile. 256 323 IPR000210 GO:0005515
Accr4g02373 420 SUPERFAMILY POZ domain 247 349 IPR011333 -
Accr4g02373 420 Gene3D Potassium Channel Kv1.1; Chain A 247 390 IPR011333 -
Accr4g02373 420 SMART BTB_4 256 353 IPR000210 GO:0005515
Accr4g02373 420 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 2 413 IPR044282 -
Accr4g02373 420 Pfam BTB/POZ domain 249 350 IPR000210 GO:0005515
Accr4g02373 420 SMART arm_5 184 224 IPR000225 GO:0005515
Accr4g02373 420 SMART arm_5 89 129 IPR000225 GO:0005515
Accr4g02373 420 SMART arm_5 48 88 IPR000225 GO:0005515
Accr4g02373 420 SMART arm_5 6 46 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g02373 Accr-Chr4 40417266 40420743 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g02373 52 223 U-box Gene Family AT5G40140 30.286 4.23e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Accr4g02373 BTB 5.8e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g02373 - - qsa:O6P43_007033 528.865