Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g02372 ATGGATCAGCCCCCATCCTCTGCCGGTAGACGCAGCTTGAAGCGCAATCGCAAACAAGAATTCGCGGAAGAAGGAGCAGTTCATCCTACCACGGATTGTAAAGTGTTGGCTCTCGAACCTCAACAATCTCATCAAGATCTGTTGAGTGAAGTTGTGGCGCAAGTCACTATTCTCAACTCCAGTTTATCATCGTCTCAGTCGGATCGCCTCACGGCCAAGCGCGCTGCTCATCTTCTCTCTGAACTCGCCGAGAATGAGTTAATTGTGGACAGTATAGTGGACTGCGGAGCCGTTCCTGCTTTGTTACAACATCTGAAAGCTCCTGAACCAGGTGTTACCAAGCCTTACGAGCATGAGGTGGAACAGGGATGCCTCTTGATCCTCGCCCTTCTTGCTAAGAAACAGCCACAGCACCAACAACTCATTGTGGATGCTGGAGCTTTGGCATATCTTATGGATTTGTTGAAGAGGCACAAGACCTGTGGCAATTCACCAGCACTTACTGGACTTCTAACGAGTGCAGCTAACGCCATCAACAACCTTGCGGCCGGAAATAGCAGCATTAAAACCCGTGTTGGTATGGAAGGCGGCATCCCTCCTCTTGTTGAATTATTTGAATTTGATGATGCAAAGCCACAAAGTGCGGCTGCAGGAGCTTTACTGAGTCTTGCATTAAAAAATAATGAGAACAAAAACCAGATTCTCAAATTGAATGTACTGCCTACGCTTGTGCTAATGCTTGGATCAGAGCATGCTACAACACATTGTGAAGCAGTTTCCGTGATTTCAATGCTGGCCTCTTATTCTCCAAAGATGACAACCAAAGTTCTTCTAGCTGGTTCTCTGCAACCAGTAATTATATTGCTTAGATCTTGCTGTTTCAAGTGTCAAAAAGAAGCAGCTCGTTTAGTTGGTATATTTGCAAGGACAGATTCTGATTGCAAGGTTCACATTGCTCAAAGAGGGGCTATACCGCCACTGATTGACATGCTTAAGTCTCCACATGCAGAGCTTCGAGAAATGTCAGGTTTTGCAATTGCAACACTTGTTGAGGACCCACACAATCAAGTTGGTATTGCTTATAATGGAGGTATAGAACCTTTACTCAACCTTCTTTCCTCCAAGAAAAAAACTGTCCAACATAATGCAACCTTTTGTGTGTACCGTCTTGCTGAAAATGAGGACAATGTTGTGGATATTATTAAGTTGGGCGGTGTTCAAAAACTATTGGATGGAGATTTCACAGCTAAATCTGCTAAAAAGTTTGTAGGAAATACCATGGAAGTATTACAGGAAAAAATGCATGGACGAGTGCTGAAACAGCTGTTGCATCTTATACGATTCGGAGAAAAGGCTGTTCAAAGTTATGTGGTTTTGGCTCTTGCTCATTTATGTTCCTCTGATGATCAGAAAATTATTTTTGTTGACAACAATGGACTTGCCTTCCTAGTAGATCTGCTAACATCTAGAAATCTTAATAAAAAACGTGAGGCTTCAATGGCACTTTACTCTTTGGCGATCAGAAGCACATCTATCTCTCCCTTAGATACTACTCCTTCGTCCATGACTCCTCAGGTATATTTATGCGAGCGATATGTTAACAATCCTGCGCTTTCTGATGTCACCTTTTTAGTTGAAGGAAAACGGTTCTATGCTCATCGAATTTCTTTGCTTGCTTCCTTTGATGCGTTTCGAGCAATGCTTGATGGTGTTTACCGGGAGAAGGAAGCGAAAGATATACCGATTCCAAACATTAAATGGGTTGTCTTTGAATTGATGATGAGATTTATCTATACAGGAACTGTAGATGTCAATTTGGATCTTGCTCAAGATCTCCTAAGAGCTGCTGATCAGTATCTTGTGGATGGTCTTAAGCGATCTTGTGAATGTGTAATAGCTCAGGATATTTCCTTGGGAAATGTTTCTCAATTGTATGAGTTATCAGATTCAATGAATGCTATGTCATTGAGGCGAGCATGTATATTGTTTTTGTTGGAGCAATTTGAGAAATTGAGTGTCAAACCATGGTATAACTGCCTGCTGCGTCGTGTCGCCCCAGATATAATCGAATTTTTCAGAAGTTTACTTGGGAGTGGAATAGATAAGAAATAG 2112 0.4223 MDQPPSSAGRRSLKRNRKQEFAEEGAVHPTTDCKVLALEPQQSHQDLLSEVVAQVTILNSSLSSSQSDRLTAKRAAHLLSELAENELIVDSIVDCGAVPALLQHLKAPEPGVTKPYEHEVEQGCLLILALLAKKQPQHQQLIVDAGALAYLMDLLKRHKTCGNSPALTGLLTSAANAINNLAAGNSSIKTRVGMEGGIPPLVELFEFDDAKPQSAAAGALLSLALKNNENKNQILKLNVLPTLVLMLGSEHATTHCEAVSVISMLASYSPKMTTKVLLAGSLQPVIILLRSCCFKCQKEAARLVGIFARTDSDCKVHIAQRGAIPPLIDMLKSPHAELREMSGFAIATLVEDPHNQVGIAYNGGIEPLLNLLSSKKKTVQHNATFCVYRLAENEDNVVDIIKLGGVQKLLDGDFTAKSAKKFVGNTMEVLQEKMHGRVLKQLLHLIRFGEKAVQSYVVLALAHLCSSDDQKIIFVDNNGLAFLVDLLTSRNLNKKREASMALYSLAIRSTSISPLDTTPSSMTPQVYLCERYVNNPALSDVTFLVEGKRFYAHRISLLASFDAFRAMLDGVYREKEAKDIPIPNIKWVVFELMMRFIYTGTVDVNLDLAQDLLRAADQYLVDGLKRSCECVIAQDISLGNVSQLYELSDSMNAMSLRRACILFLLEQFEKLSVKPWYNCLLRRVAPDIIEFFRSLLGSGIDKK 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g02372 703 ProSiteProfiles BTB domain profile. 539 606 IPR000210 GO:0005515
Accr4g02372 703 MobiDBLite consensus disorder prediction 13 27 - -
Accr4g02372 703 MobiDBLite consensus disorder prediction 1 27 - -
Accr4g02372 703 SUPERFAMILY POZ domain 530 632 IPR011333 -
Accr4g02372 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 405 IPR000225 GO:0005515
Accr4g02372 703 SUPERFAMILY ARM repeat 60 410 IPR016024 -
Accr4g02372 703 SMART arm_5 135 183 IPR000225 GO:0005515
Accr4g02372 703 SMART arm_5 422 466 IPR000225 GO:0005515
Accr4g02372 703 SMART arm_5 85 133 IPR000225 GO:0005515
Accr4g02372 703 SMART arm_5 269 309 IPR000225 GO:0005515
Accr4g02372 703 SMART arm_5 467 507 IPR000225 GO:0005515
Accr4g02372 703 SMART arm_5 311 351 IPR000225 GO:0005515
Accr4g02372 703 SMART arm_5 352 392 IPR000225 GO:0005515
Accr4g02372 703 SMART arm_5 227 267 IPR000225 GO:0005515
Accr4g02372 703 SMART arm_5 185 225 IPR000225 GO:0005515
Accr4g02372 703 SMART BTB_4 539 636 IPR000210 GO:0005515
Accr4g02372 703 SUPERFAMILY ARM repeat 438 509 IPR016024 -
Accr4g02372 703 Gene3D - 210 529 IPR011989 -
Accr4g02372 703 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 696 IPR044282 -
Accr4g02372 703 Pfam BTB/POZ domain 532 633 IPR000210 GO:0005515
Accr4g02372 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 231 IPR000225 GO:0005515
Accr4g02372 703 Gene3D - 36 209 IPR011989 -
Accr4g02372 703 Gene3D Potassium Channel Kv1.1; Chain A 530 673 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g02372 Accr-Chr4 40417266 40422353 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g02372 315 410 U-box Gene Family AT5G40140 37.500 2.12e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Accr4g02372 BTB 1.3e-21 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g02372 - - sind:105165291 794.267