Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g02371 ATGGATCAGCCCCCATCCTCTGCCGGTAGACGCAGCTTGAAGCGCAATCGCAAACAAGAATTCGCGGAAGAAGGAGCAGTTCATCCTACCACGGATTGTAAAGTGTTGGCTCTCGAACCTCAACAATCTCATCAAGATCTGTTGAGTGAAGTTGTGGCGCAAGTCACTATTCTCAACTCCAGTTTATCATCGTCTCAGTCGGATCGCCTCACGGCCAAGCGCGCTGCTCATCTTCTCTCTGAACTCGCCGAGAATGAGTTAATTGTGGACAGTATAGTGGACTGCGGAGCCGTTCCTGCTTTGTTACAACATCTGAAAGCTCCTGAACCAGGTGTTACCAAGCCTTACGAGCATGAGGTGGAACAGGGATGCCTCTTGATCCTCGCCCTTCTTGCTAAGAAACCACAGCACCAACAACTCATTGTGGATGCTGGAGCTTTGGCATATCTTATGGATTTGTTGAAGAGGCACAAGACCTGTGGCAATTCACCAGCACTTACTGGACTTCTAACGAGTGCAGCTAACGCCATCAACAACCTTGCGGCCGGAAATAGCAGCATTAAAACCCGTGTTGGTATGGAAGGCGGCATCCCTCCTCTTGTTGAATTATTTGAATTTGATGATGCAAAGCCACAAAGTGCGGCTGCAGGAGCTTTACTGAGTCTTGCATTAAAAAATAATGAGAACAAAAACCAGATTCTCAAATTGAATGTACTGCCTACGCTTGTGCTAATGCTTGGATCAGAGCATGCTACAACACATTGTGAAGCAGTTTCCGTGATTTCAATGCTGGCCTCTTATTCTCCAAAGATGACAACCAAAGTTCTTCTAGCTGGTTCTCTGCAACCAGTAATTATATTGCTTAGATCTTGCTGTTTCAAGTGTCAAAAAGAAGCAGCTCGTTTAGTTGGTATATTTGCAAGGACAGATTCTGATTGCAAGGTTCACATTGCTCAAAGAGGGGCTATACCGCCACTGATTGACATGCTTAAGTCTCCACATGCAGAGCTTCGAGAAATGTCAGGTTTTGCAATTGCAACACTTGTTGAGGACCCACACAATCAAGTTGGTATTGCTTATAATGGAGGTATAGAACCTTTACTCAACCTTCTTTCCTCCAAGAAAAAAACTGTCCAACATAATGCAACCTTTTGTGTGTACCGTCTTGCTGAAAATGAGGACAATGTTGTGGATATTATTAAGTTGGGCGGTGTTCAAAAACTATTGGATGGAGATTTCACAGCTAAATCTGCTAAAAAGTTTGTAGGAAATACCATGGAAGTATTACAGGAAAAAATGCATGGACGAGTGCTGAAACAGCTGTTGCATCTTATACGATTCGGAGAAAAGGCTGTTCAAAGTTATGTGGTTTTGGCTCTTGCTCATTTATGTTCCTCTGATGATCAGAAAATTATTTTTGTTGACAACAATGGACTTGCCTTCCTAGTAGATCTGCTAACATCTAGAAATCTTAATAAAAAACGTGAGGCTTCAATGGCACTTTACTCTTTGGCGATCAGAAGCACATCTATCTCTCCCTTAGATACTACTCCTTCGTCCATGACTCCTCAGGTATATTTATGCGAGCGATATGTTAACAATCCTGCGCTTTCTGATGTCACCTTTTTAGTTGAAGGAAAACGGTTCTATGCTCATCGAATTTCTTTGCTTGCTTCCTTTGATGCGTTTCGAGCAATGCTTGATGGTGTTTACCGGGAGAAGGAAGCGAAAGATATACCGATTCCAAACATTAAATGGGTTGTCTTTGAATTGATGATGAGATTTATCTATACAGGAACTGTAGATGTCAATTTGGATCTTGCTCAAGATCTCCTAAGAGCTGCTGATCAGTATCTTGTGGATGGTCTTAAGCGATCTTGTGAATGTGTAATAGCTCAGGATATTTCCTTGGGAAATGTTTCTCAATTGTATGAGTTATCAGATTCAATGAATGCTATGTCATTGAGGCGAGCATGTATATTGTTTTTGTTGGAGCAATTTGAGAAATTGAGTGTCAAACCATGGTATAACTGCCTGCTGCGTCGTGTCGCCCCAGATATAATCGAATTTTTCAGAAGTTTACTTGGGAGTGGAATAGATAAGAAATAG 2109 0.422 MDQPPSSAGRRSLKRNRKQEFAEEGAVHPTTDCKVLALEPQQSHQDLLSEVVAQVTILNSSLSSSQSDRLTAKRAAHLLSELAENELIVDSIVDCGAVPALLQHLKAPEPGVTKPYEHEVEQGCLLILALLAKKPQHQQLIVDAGALAYLMDLLKRHKTCGNSPALTGLLTSAANAINNLAAGNSSIKTRVGMEGGIPPLVELFEFDDAKPQSAAAGALLSLALKNNENKNQILKLNVLPTLVLMLGSEHATTHCEAVSVISMLASYSPKMTTKVLLAGSLQPVIILLRSCCFKCQKEAARLVGIFARTDSDCKVHIAQRGAIPPLIDMLKSPHAELREMSGFAIATLVEDPHNQVGIAYNGGIEPLLNLLSSKKKTVQHNATFCVYRLAENEDNVVDIIKLGGVQKLLDGDFTAKSAKKFVGNTMEVLQEKMHGRVLKQLLHLIRFGEKAVQSYVVLALAHLCSSDDQKIIFVDNNGLAFLVDLLTSRNLNKKREASMALYSLAIRSTSISPLDTTPSSMTPQVYLCERYVNNPALSDVTFLVEGKRFYAHRISLLASFDAFRAMLDGVYREKEAKDIPIPNIKWVVFELMMRFIYTGTVDVNLDLAQDLLRAADQYLVDGLKRSCECVIAQDISLGNVSQLYELSDSMNAMSLRRACILFLLEQFEKLSVKPWYNCLLRRVAPDIIEFFRSLLGSGIDKK 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g02371 702 SUPERFAMILY ARM repeat 61 409 IPR016024 -
Accr4g02371 702 Gene3D - 208 411 IPR011989 -
Accr4g02371 702 MobiDBLite consensus disorder prediction 13 27 - -
Accr4g02371 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 362 404 IPR000225 GO:0005515
Accr4g02371 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 195 230 IPR000225 GO:0005515
Accr4g02371 702 Gene3D - 41 207 IPR011989 -
Accr4g02371 702 MobiDBLite consensus disorder prediction 1 27 - -
Accr4g02371 702 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 695 IPR044282 -
Accr4g02371 702 Pfam BTB/POZ domain 531 632 IPR000210 GO:0005515
Accr4g02371 702 SUPERFAMILY POZ domain 529 631 IPR011333 -
Accr4g02371 702 Gene3D Potassium Channel Kv1.1; Chain A 528 672 IPR011333 -
Accr4g02371 702 SMART BTB_4 538 635 IPR000210 GO:0005515
Accr4g02371 702 ProSiteProfiles BTB domain profile. 538 605 IPR000210 GO:0005515
Accr4g02371 702 SUPERFAMILY ARM repeat 437 508 IPR016024 -
Accr4g02371 702 Gene3D - 416 513 IPR011989 -
Accr4g02371 702 SMART arm_5 466 506 IPR000225 GO:0005515
Accr4g02371 702 SMART arm_5 184 224 IPR000225 GO:0005515
Accr4g02371 702 SMART arm_5 268 308 IPR000225 GO:0005515
Accr4g02371 702 SMART arm_5 85 133 IPR000225 GO:0005515
Accr4g02371 702 SMART arm_5 351 391 IPR000225 GO:0005515
Accr4g02371 702 SMART arm_5 226 266 IPR000225 GO:0005515
Accr4g02371 702 SMART arm_5 310 350 IPR000225 GO:0005515
Accr4g02371 702 SMART arm_5 421 465 IPR000225 GO:0005515
Accr4g02371 702 SMART arm_5 134 182 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g02371 Accr-Chr4 40417266 40422353 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g02371 314 409 U-box Gene Family AT5G40140 37.500 2.09e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Accr4g02371 BTB 1.3e-21 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g02371 - - sind:105165291 798.89