Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g02320 ATGGCGAAAGAAGGTGCCCTTCTCGTGAGTTCGAAGGCAGAGTTGAAACGTAAGGATAAGCAACAAAAGAAGGCCAAGTCTGGCGGTTTTGAGTCCTTAGGTCTCAGCCCCAATATGTACAGAGGAATCAAGCGCAAGGGTTATAAGGTGCCCACTCCAATTCAGAGGAAGACCATGCCAATCATTCTTTCGGGTGCTGATGTTGTTGCCATGGCTCGTACTGGGTCTGGTAAAACTGCTGCATTTCTCATCCCCATGCTTCAGCGTTTGAATCAGCATCTTCCTCAGGGTGGTGTTAGAGCTCTCATTTTGTCCCCTACAAGAGACTTGGCGCTTCAGACATTGAAGTTCACCAAAGAGCTTGGCCACTTCACAGATCTTCGTGTTAGTTTATTAGTTGGAGGTGATAGTATGGAAAGTCAGTTTGAGGAGCTAGCACAAAATCCTGACATTATAATTGCAACGCCTGGTAGACTTATGCACCATTTGTCGGAAATTGATGACATGTCACTGCGTACTGTGGAATATGTTGTTTTTGATGAGGCAGATTGTTTATTCGGCATGGGTTTTGCTCAGCAATTGCATCAAATTCTTACACGGCTAGGTGAGAATCGTCAAACCTTGCTTTTCAGTGCCACTTTACCTAGTGCCCTTGCTGAATTTGCAAAAGCTGGACTGCGTGACCCTCAGCTTGTTCGTCTGGATTTGGAAACTAAAATCAGTCCCGATCTGAAGCTTGCCTTTTTCACCTTGAGGCAGGAAGAAAAATATGCAGCATTGTTGTATTTGATTAGGGAACAAATTAGCTCTGATGAGCAGACACTCATATTTGTATCCACAAAACATCATGTTGAATTTCTTAACGCATTGTTTAAGGAAGAGGGTATTGAGCCATCTGTATGTTATGGTGACATGGATCAAGATGCTCGCAAAATTCATATATCAAGGTTCAGGTCAAGGAAGACAATGCTGTTGATTGTGACAGATGTTGCTGCTCGGGGCATAGATATTCCATTACTTGATAATGTTATCAACTGGGACTTCCCCCCCAAGCCTAAAATATTTATTCATCGAGTTGGAAGGGTTGCAAGAGCGGGTCGCACTGGTACTGCCTATTCTTTTTTGACTTCAGAGGATATGCCATACCTTTTGGATCTCCACCTGTTCCTCTCAAGACCAATCAAAGCTGCTCCAACTGAAGAAGAGGTTCTGCAGGATATGGAGGGAGCATTTTCCAAAATTGACCAGGCAATAGCAAAGGGAGAAACTGTTTATGGTCGATTCCCTCAAAATGTCTTAGACCTTGTTTCAGACAGACTTCGAGAAACCATTGATGCTTCTGCTGAACTTACATCGTTGCAGAAGACATGTCAAAATGCATTTCGTTTATACTCAAAGACAAAACCCTTGCCTGCAAACGAGTCTATTAGAAGAGCAAAAGATCTGCCACGTGAGGGGTTGCATCCAATTTTCAATAATGTATTGGAAACAGGGGAGTTAATGGCCCTTGCTTTTACAGAGCACTTGAAAAAATTTAGGCCAAAGCAGACTGTTTTGGAGACTGAAGGTGAAGCAGCTAAATCTAAGCATCTACAGGGGCCTGCTGGTCAATGGGTTGATGTGATGAAGAAAAAAAGAGCCATTCATGAGAATATTATAAATTTAGTCCACGATCAGCGCTCTAAGAGTAAGGCAGAAGAGGGGGAAATTCAATTGGATATCGCTCCTTCTGTGGAGAAAGGAAAAAAAGCACTGTCTGGTTCTAAGAGAAAGCCACAAAGTTTCAAGGATGAGGAATACTACATAAGTTCAATACCCCAAAATCATCATATGGAAGCAGGTCTTTCAGTCAGGGCAAAAGAAGACTTTTCTTCAAATAGATTGGAATCAGCTGTCCTCGATCTAGTTGCAGATGACAGTGCTGGCATTCAGAAACAAAAGTCAGTATATCATTGGGATAAGAAAAGTAAAAAGTATATCAAGCTAAACAATGGTGAGCGTGTTGCTGCAAATGGAAAGATAAAGACAGAGGGTGGTGCAAAAGTGAAGGCCAACAAGACTGGTATATATAAGAAGTGGAAAGAACGCTCCCACAATAAGATAGGTGTTAAGGGTATGGATAATGAAGGTGATGCTTATGGATCCATGAGTTCGGCAGGGCATTTCCGAGGCGGTGCCCGGAAATTTAAGGGCAGCAAGAAGCAGAATTCAATGCCAAATGCTCATGTGCGTTCGGAGATCAAAGATTTAGATCAAATCCGAAAGGACAGGCAGAAGAAGGCCGACAAACTTTCACATCTGAAGAACCAGTCTGGTAAAAAGGGTAAAAAATTTGGTAAAAATGGGAAAAAAGGAAAGGGTGGTGGTGGACATGGAAAGAAAGGAAAGGGAAGGTAA 2397 0.4264 MAKEGALLVSSKAELKRKDKQQKKAKSGGFESLGLSPNMYRGIKRKGYKVPTPIQRKTMPIILSGADVVAMARTGSGKTAAFLIPMLQRLNQHLPQGGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEIDDMSLRTVEYVVFDEADCLFGMGFAQQLHQILTRLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKLAFFTLRQEEKYAALLYLIREQISSDEQTLIFVSTKHHVEFLNALFKEEGIEPSVCYGDMDQDARKIHISRFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFIHRVGRVARAGRTGTAYSFLTSEDMPYLLDLHLFLSRPIKAAPTEEEVLQDMEGAFSKIDQAIAKGETVYGRFPQNVLDLVSDRLRETIDASAELTSLQKTCQNAFRLYSKTKPLPANESIRRAKDLPREGLHPIFNNVLETGELMALAFTEHLKKFRPKQTVLETEGEAAKSKHLQGPAGQWVDVMKKKRAIHENIINLVHDQRSKSKAEEGEIQLDIAPSVEKGKKALSGSKRKPQSFKDEEYYISSIPQNHHMEAGLSVRAKEDFSSNRLESAVLDLVADDSAGIQKQKSVYHWDKKSKKYIKLNNGERVAANGKIKTEGGAKVKANKTGIYKKWKERSHNKIGVKGMDNEGDAYGSMSSAGHFRGGARKFKGSKKQNSMPNAHVRSEIKDLDQIRKDRQKKADKLSHLKNQSGKKGKKFGKNGKKGKGGGGHGKKGKGR 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g02320 798 SMART ultradead3 47 254 IPR014001 -
Accr4g02320 798 Gene3D - 3 235 IPR027417 -
Accr4g02320 798 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 256 405 IPR001650 -
Accr4g02320 798 CDD DEADc_DDX54 28 233 IPR033517 -
Accr4g02320 798 Pfam DEAD/DEAH box helicase 52 219 IPR011545 GO:0003676|GO:0005524
Accr4g02320 798 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 28 56 IPR014014 GO:0003724
Accr4g02320 798 Pfam Helicase conserved C-terminal domain 255 366 IPR001650 -
Accr4g02320 798 MobiDBLite consensus disorder prediction 744 769 - -
Accr4g02320 798 Pfam DBP10CT (NUC160) domain 634 695 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Accr4g02320 798 MobiDBLite consensus disorder prediction 10 26 - -
Accr4g02320 798 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 384 IPR027417 -
Accr4g02320 798 SMART helicmild6 285 366 IPR001650 -
Accr4g02320 798 MobiDBLite consensus disorder prediction 724 798 - -
Accr4g02320 798 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 14 699 - -
Accr4g02320 798 MobiDBLite consensus disorder prediction 1 31 - -
Accr4g02320 798 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 59 232 IPR014001 -
Accr4g02320 798 MobiDBLite consensus disorder prediction 770 798 - -
Accr4g02320 798 SMART DBP10CT_2 634 696 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Accr4g02320 798 CDD SF2_C_DEAD 251 375 - -
Accr4g02320 798 Gene3D - 247 468 IPR027417 -
Accr4g02320 798 Coils Coil 750 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g02320 Accr-Chr4 37902250 37909184 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g02320 30 399 Eukaryotic Initiation Factors Gene Family AT1G72730 33.065 1.62e-59 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g02320 K14808 - gmx:100806274 1251.11