Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g02168 ATGATCCATGGAAGAAGCGGCGGCAGTACTGGTGGAAAAGGAGAGGCGGAGGCCCTGGATTTGCCTCCGAGTTTAAGGTTTCATCCGACGGACAAGGAGATCATCACTTGTTATCTGATGGAGAAGGTGCTGAACAGCAGTTTCAGTGCAATTGCAATCGGTGAAGCTGATTTGAGCAAGTCTGAGCCTTGGGATTTCCCTAAGAGGACGGGGATGGGGGAGGAAGACTGGTACTTCTTCTGTCAAAGAGACCGGAAGAAATATCGGACGGGGACGAGAACGATTAGAGTGACGAAGTTCGGGTACTGGAAGGCGACCGGAAAAGATAGAGAGATATACAGAGGGAAAGACAACCTGGTCGGGATGAAGAAAACCCTCATCTTCTACAGAGGGAGGGCTGCCAAAGGCGAGAAAACTGGCTGGGTTATGCATGAATTCCGATTAGAGGGCCAACTCCCCACTTACAACCTCCCCAAGGCAGCCAAGAATGAATGGGTGGTGTGCAAGATTTTCCACAAGGACACGGACGTCGAAAAGATTACTGAGCTTCTAAGGATCAACTCTCTCAGCGATCATCTTCCAACAACCAACAATCAGACGACGGTGATAAAGGTGGAACAACAAGACTACAGAAACTATGAGATGATGACGATGATCCCCAGTTACTGCACCGGCGACGCCAGTCATAATCCTCTCTCGCAAGGAACAATCCAGAATAATCCAAGTTTGTGGGCTGAGCAGAATAATGTTGTGATGTCGGGTTACAGGAACAGAGATGTGACGGGAGGTGGCGTGGAGAATGAAAAGGTAGCGTGGGGAAATGGATAA 828 0.4928 MIHGRSGGSTGGKGEAEALDLPPSLRFHPTDKEIITCYLMEKVLNSSFSAIAIGEADLSKSEPWDFPKRTGMGEEDWYFFCQRDRKKYRTGTRTIRVTKFGYWKATGKDREIYRGKDNLVGMKKTLIFYRGRAAKGEKTGWVMHEFRLEGQLPTYNLPKAAKNEWVVCKIFHKDTDVEKITELLRINSLSDHLPTTNNQTTVIKVEQQDYRNYEMMTMIPSYCTGDASHNPLSQGTIQNNPSLWAEQNNVVMSGYRNRDVTGGGVENEKVAWGNG 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g02168 275 ProSiteProfiles NAC domain profile. 21 173 IPR003441 GO:0003677|GO:0006355
Accr4g02168 275 Gene3D NAC domain 30 179 IPR036093 GO:0003677|GO:0006355
Accr4g02168 275 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 218 - -
Accr4g02168 275 Pfam No apical meristem (NAM) protein 22 148 IPR003441 GO:0003677|GO:0006355
Accr4g02168 275 FunFam NAC domain-containing protein 100-like 30 177 - -
Accr4g02168 275 MobiDBLite consensus disorder prediction 1 24 - -
Accr4g02168 275 SUPERFAMILY NAC domain 17 173 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g02168 Accr-Chr4 30602684 30603824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g02168 8 211 NAC Transcription Factor Family AT5G18270 55.909 1.90e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr4g02168 NAM 1.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g02168 - - pcin:129284658 313.153