Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g02166 ATGGGCAACTCTTGCATGAAGCCCGTTGCTCATGTTAATTCCTCCAATTTGTCTGGAAGTACAAGGTCAAGTAAGACACAACAAAATTACAATTCTTCAGAAAAAAAAGCTCCTTTGCAAAGTTCAGCAGCTGATCCTGTCAGACCCATTTCCAGTAATCTCAAGTCCTTTAGCTTCAATGATCTAAAGGAAGCCACCAAGAACTTCCGTGAAGAAAATTTTATAGGAGAGGGAGGTTTTGGGCGTGTCTTCAAGGGATGGATTAACATGAGCACCTTTGCTCCTTCAAAACCAGGGAGTGGAATGGTAGTGGCCATTAAGCAGCTCAAACCAGAAAGCTTTCAAGGCCACAAGGAATGGCTTGCTGAAGTCAATTATCTAGGGCAGCTTCACCATGAGAATATGCTGAAACTTATTGGTTATTGTTCAGAGGATAGAAACAGGCTTCTAGTTTATGAGTTCATGCAAAAAGGAAGCTTGGAGAATCATTTATTTAGAAAAGGTGTTCAACCCCTATCTTGGCCGACCCGTATCAATATTGCAATTGGTGTTGCAAGAGGATTAACATTCTTGCATAGCCTGGATGCAAATGTTATCTACCGTGATTTAAAGGCTTCTAACATCCTACTTGATTCGGATTTCTATCCAAAGCTTGCAGATTTTGGTTTGGCCAGAGATGGCCCTACTGGAGATAACACTCATGTTTCAACCAGAGTTATTGGAACTCAAGGCTATGCTGCACCAGAGTATGTAGCAACAGGTCACTTGACTCTAAGAAGTGATGTCTACAGCTTTGGTGTCGTCTTGCTAGAGTTGTTAACCGGGAGACGAGCATTGGAAGATGAAGGACCCGGGTCCATTGAAGAAACTCTGGTGGACTGGGCAAAGCCTTTTCTGAGTGATAACAGGCGAGTTTTGAGGATCATGGATACGAGGCTAGGCGGCCAATACTCCAAGAAAGGAGCTCAAGCTGCAGCTGCACTTGCATTGCAATGCTTGACCTCAGATCCTAGATACAGACCTCCAATGGTGGATGTTCTAGCTGCGTTGGAATCTCTCAGTTCTTCAAGTTCAATGCCAAGGACGCCAAAATCTTACAGTGATAATATTTCAAACAGGAATTCTAGTCCTAGTCATCCCCAAAAGCCAATCAGACATCAAAGGTCTGTTTGA 1173 0.4331 MGNSCMKPVAHVNSSNLSGSTRSSKTQQNYNSSEKKAPLQSSAADPVRPISSNLKSFSFNDLKEATKNFREENFIGEGGFGRVFKGWINMSTFAPSKPGSGMVVAIKQLKPESFQGHKEWLAEVNYLGQLHHENMLKLIGYCSEDRNRLLVYEFMQKGSLENHLFRKGVQPLSWPTRINIAIGVARGLTFLHSLDANVIYRDLKASNILLDSDFYPKLADFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTLRSDVYSFGVVLLELLTGRRALEDEGPGSIEETLVDWAKPFLSDNRRVLRIMDTRLGGQYSKKGAQAAAALALQCLTSDPRYRPPMVDVLAALESLSSSSSMPRTPKSYSDNISNRNSSPSHPQKPIRHQRSV 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g02166 390 Pfam Protein tyrosine and serine/threonine kinase 73 348 IPR001245 GO:0004672|GO:0006468
Accr4g02166 390 FunFam Serine/threonine-protein kinase BIK1 36 154 - -
Accr4g02166 390 MobiDBLite consensus disorder prediction 8 47 - -
Accr4g02166 390 Gene3D Phosphorylase Kinase; domain 1 45 154 - -
Accr4g02166 390 MobiDBLite consensus disorder prediction 354 390 - -
Accr4g02166 390 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 155 364 - -
Accr4g02166 390 PANTHER OS01G0588500 PROTEIN-RELATED 31 353 - -
Accr4g02166 390 ProSiteProfiles Protein kinase domain profile. 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr4g02166 390 CDD STKc_IRAK 75 346 - -
Accr4g02166 390 MobiDBLite consensus disorder prediction 354 384 - -
Accr4g02166 390 ProSitePatterns Protein kinases ATP-binding region signature. 75 107 IPR017441 GO:0005524
Accr4g02166 390 SUPERFAMILY Protein kinase-like (PK-like) 46 357 IPR011009 -
Accr4g02166 390 Gene3D Transferase(Phosphotransferase) domain 1 155 374 - -
Accr4g02166 390 MobiDBLite consensus disorder prediction 1 47 - -
Accr4g02166 390 SMART serkin_6 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr4g02166 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g02166 Accr-Chr4 30488823 30492344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g02166 13 368 Glycoside Hydrolase AT3G07070 45.856 8.81e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Accr4g02166 PK_Tyr_Ser-Thr 3.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g02166 - - gmx:102664409 563.918