Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g02147 ATGTCAAGTGGAGCAACGCACTGGTGTTATCGATGCAGACAGGAAATCATACCTGAAGGGAGAGATTTCACATGCCCTCATTGTGATGGGGGTTTTGTGGTAGAACTTGACGAGATGCAAAGAACAGCACACATGGAGGATTTTCATCAAGCACCCGACATTTTTGGTGCTATTCATGCTGTTATGGGGAGGAGATTCCCTGAACCAAGATTTATAGATTCAGTTGATCATATGATGAGGCAGAGAATGGCTAGACGAAACCCGGACTATGATGTTAGAGGGCGATCTATATCTGCCATTGGTCCTGATCAGAGTTGGGGTTTTATTAGTTCTGGTCCTTACTTGATATTTCATGGTCAGGTTCCTGGATTCACTTTGACTAATGGCATCCCTAGAAGTGGTCCTAGGCGTGTTGATGTTAGTGACTACTTCATGGGGCCTGGACTGGAAGAACTTATTGAACAGCTCACAATGAATGACCGGCATGGTCCGGCCCCGGCCTCGCGTTCTTCAATTGATGCAATGCCTACCATAACAATCACACAGGCTCATCTTCGTTCTGACTCTCAATGTCCGGTTTGTCAAGACAAATTTGAACTTGGCTCTCAGGCAAGGGCGATGCCATGTAGCCATATTTATCATACTGATTGTATTGTCCCTTGGTTGATTCAACATAATTCATGCCCTGTTTGCCGTGTTGAGTTGCCGCCTCATGGACAGGTTAATCCTCATGCTAGTCATAATTTGGGAGGAATTAATGCAGAAAGCACCAACAATGATAGCCTTAGGGAGAGAGAGAATAGCCAGCAGAACCAAGGAAGGAGAAACCCGTTTTCGTTTTTGTGGCCATTCCGTTCTTCTAGCTCAAACAGTAATAATCAATATGCTGAGACCAGAGGAAGCAATAATTCTTCAAACAGTCGTGACCAGAATAATAATGGAACGAACCATAGCCGATGGCGCTTTGATGGATGA 975 0.4482 MSSGATHWCYRCRQEIIPEGRDFTCPHCDGGFVVELDEMQRTAHMEDFHQAPDIFGAIHAVMGRRFPEPRFIDSVDHMMRQRMARRNPDYDVRGRSISAIGPDQSWGFISSGPYLIFHGQVPGFTLTNGIPRSGPRRVDVSDYFMGPGLEELIEQLTMNDRHGPAPASRSSIDAMPTITITQAHLRSDSQCPVCQDKFELGSQARAMPCSHIYHTDCIVPWLIQHNSCPVCRVELPPHGQVNPHASHNLGGINAESTNNDSLRERENSQQNQGRRNPFSFLWPFRSSSSNSNNQYAETRGSNNSSNSRDQNNNGTNHSRWRFDG 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g02147 324 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Accr4g02147 324 FunFam E3 ubiquitin-protein ligase RING1-like 155 238 - -
Accr4g02147 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 238 IPR013083 -
Accr4g02147 324 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Accr4g02147 324 MobiDBLite consensus disorder prediction 242 324 - -
Accr4g02147 324 MobiDBLite consensus disorder prediction 271 324 - -
Accr4g02147 324 SUPERFAMILY RING/U-box 171 239 - -
Accr4g02147 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 128 236 - -
Accr4g02147 324 Pfam Ring finger domain 190 232 IPR001841 -
Accr4g02147 324 SMART ring_2 191 231 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g02147 Accr-Chr4 30158612 30159586 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g02147 135 236 C3H Transcription Factor Family AT5G01980 42.308 1.90e-23 98.6