Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g02088 ATGGGTTGGAGATGGTGCTGTGTCATACTAGTGCTGCTTCTTCTTGCTCCGTTCATGGCTTCTTCACGTTCAATTATAAGGAATTTACCTGGCTTTTCTGGTGACCTCCCATTCAAGCTTGAATCTGGATACATAGGAGTGGGAGAAGAAGAGGAAGTGCAACTATTTTACTTATTTGCGGAATCTCAAAGAAATCCCTCAAAAGATCCAATCTTACTTTGGTTTGTTGGAGGCCCTGGTTGCTCTGCCTTTTCTGCATTTCTTTTTGAAAATGGACCAGTAATGATTGATCGCAATTCCAGTGGGATTCTTCCAACACTTGTATTAAACCCTTATGCTTGGACACAGGTACTCAATATGATGTACATAGATTTACCAGTTGGCACTGGATTTTCGTACTCTGAAACACAAGAAGGCTACAATAGCAGTGATTTACTATGGATAGAGAACACATATGATTTTCTACGAAAGTGGTTTATGGATCATCCTGAGTTTGGCTCAAATCCGTTTTACGTTGGTGGTGGTTCATATTCAACTATGCCTACTGTTCCTCTTGTTAAAAAATTATATGAAGGTTACAAAGCAGGAAGCAATCCGCTCATAAATATCAAAGGTCTTGTGCTTGCCAGCCCAGCAACTGATATGTTTCTGGATTTCAACTCCGTAGTTGTTCAGGCATACCGGCTGAGTCTTATATCGGATGAGCTCTATGAGTCAATTAAAGAAAGTTGTAATGGTGATTATGTCAACATTAATCCAAACAACACAAAGTGTGCCTCAGATTATGAAGCTTTCTCTCAGCTGATTCGTTACATAAACATAAATCAAGTTTTGGAACCTTTTTGCATTGCTACTCCCGATCTCAAATACAGAAGTCTCTTGGAAGATTCATCACCAAAAGGGGTCCTTCAGTCATTGCAGAAAGTTTCAGATTTCTGGTGTCGTGGTTATGATCACATACTTGTTAACCAATGGGCAAATAATGAGGATGTTAGGAAGGCTCTTCATATTAGAGAGGGAACTAAAGGGGAGTTCTTGAGATGCAATAAGAGTTTATCATACAAAGTTCATCTACGAAGTGTTGTTGATTATCATCGCAATTTCACTGAGACGAACCTTCAATGTCTTGTGTACTGTGCTGATCTTGACTTGTCCATACCACATATCGGCACACAAGCTTGGATAAGGTCTTTGAACTTGGAAATAAAGGATCCTTGGCGTGCATGGTTTGTTGATGGCCAAGTTGCAGGATACACACAACTGTACAAGAACAATGACTACTTTTTGACATATGTTGCAGTGAAAGGTGCTGGTCATGTAGCTCATTCATATAAACCTAAAGAAGTTTTGCAAGTAATAGACAGGTGGCTCTCATATGCTCTTATCTAA 1389 0.396 MGWRWCCVILVLLLLAPFMASSRSIIRNLPGFSGDLPFKLESGYIGVGEEEEVQLFYLFAESQRNPSKDPILLWFVGGPGCSAFSAFLFENGPVMIDRNSSGILPTLVLNPYAWTQVLNMMYIDLPVGTGFSYSETQEGYNSSDLLWIENTYDFLRKWFMDHPEFGSNPFYVGGGSYSTMPTVPLVKKLYEGYKAGSNPLINIKGLVLASPATDMFLDFNSVVVQAYRLSLISDELYESIKESCNGDYVNINPNNTKCASDYEAFSQLIRYININQVLEPFCIATPDLKYRSLLEDSSPKGVLQSLQKVSDFWCRGYDHILVNQWANNEDVRKALHIREGTKGEFLRCNKSLSYKVHLRSVVDYHRNFTETNLQCLVYCADLDLSIPHIGTQAWIRSLNLEIKDPWRAWFVDGQVAGYTQLYKNNDYFLTYVAVKGAGHVAHSYKPKEVLQVIDRWLSYALI 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g02088 462 FunFam Carboxypeptidase 312 461 - -
Accr4g02088 462 Pfam Serine carboxypeptidase 30 458 IPR001563 GO:0004185|GO:0006508
Accr4g02088 462 SUPERFAMILY alpha/beta-Hydrolases 26 458 IPR029058 -
Accr4g02088 462 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 26 446 IPR001563 GO:0004185|GO:0006508
Accr4g02088 462 FunFam Serine carboxypeptidase-like 19 19 287 - -
Accr4g02088 462 Gene3D alpha/beta hydrolase 20 292 IPR029058 -
Accr4g02088 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 110 122 IPR001563 GO:0004185|GO:0006508
Accr4g02088 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 133 IPR001563 GO:0004185|GO:0006508
Accr4g02088 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 158 183 IPR001563 GO:0004185|GO:0006508
Accr4g02088 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 429 442 IPR001563 GO:0004185|GO:0006508
Accr4g02088 462 Gene3D - 314 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g02088 Accr-Chr4 27277597 27286976 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g02088 321 458 Calmodulin-binding Proteins AT2G22960 42.754 9.23e-36 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g02088 K16296 - qsu:112035786 526.939