Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g02041 ATGACTTCAGTCGTGAAGATCGAAGGCGAACAGATCCCCGCCAACGATTTTCAGGATTTGTCCATCCAAGATAAGACTGAAATGCGAAGTGAAGCAAAGTTCCTCCAGGTGGGATCTGAGAACCATGGGGGAATCTGTGCGATTTGTCTGGATAAGATAGTTCTGCAGGAAACTGCGATCGTTAAAGGTTGCGAGCATGCTTACTGTATAACATGCATTCTTCGATGGGCCACATATCGCCCCAAGGCCACCTGCCCGCAATGTAAACATCCATTTGAGTTTCTTAATTTGCATCGCTCACTTGATGGCAGGCTTCATGACTACATGTTTGAGGAAAGTGTCTGCCTACTTCTTAGAGCTTCATGGTTTAAACCTTTGAATGTAGAAGATCATGCTCAGCATGAAGAGGTGTATATGTACGATGACCTTGAAGATTATTATTATGAATACGAGGATGAAGATGATTTAGATGAAGATTATTATGGTGGCTCATCTAGCATCTGCATCGGCAACCGGAGGTGGGGAGACAATGGCTATGTCAGGGCTGGTCGGCAACAAGCTAGGCCAGTCCATCAACATATCTCCCAGAAGTCTGGGGCAAGTTCTTCTGGTGAACCAAAGAACAAAGAGGTCGCCAAAGGTGCTGCAACTGGACGACGAGCGAAGCGAGCGCTGAAACGGGAGGCAGCTGATAAGGCTGCTGCGGTGAAGCATCAGCAGCATCTGGTGAGGTTGGGAAGGAAGTGA 747 0.4739 MTSVVKIEGEQIPANDFQDLSIQDKTEMRSEAKFLQVGSENHGGICAICLDKIVLQETAIVKGCEHAYCITCILRWATYRPKATCPQCKHPFEFLNLHRSLDGRLHDYMFEESVCLLLRASWFKPLNVEDHAQHEEVYMYDDLEDYYYEYEDEDDLDEDYYGGSSSICIGNRRWGDNGYVRAGRQQARPVHQHISQKSGASSSGEPKNKEVAKGAATGRRAKRALKREAADKAAAVKHQQHLVRLGRK 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g02041 248 SMART ring_2 46 88 IPR001841 -
Accr4g02041 248 MobiDBLite consensus disorder prediction 212 238 - -
Accr4g02041 248 Pfam Ring finger domain 46 89 IPR001841 -
Accr4g02041 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 109 IPR013083 -
Accr4g02041 248 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 248 - -
Accr4g02041 248 SUPERFAMILY RING/U-box 45 95 - -
Accr4g02041 248 CDD RING-HC_Topors 46 92 - -
Accr4g02041 248 MobiDBLite consensus disorder prediction 189 205 - -
Accr4g02041 248 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
Accr4g02041 248 ProSiteProfiles Zinc finger RING-type profile. 46 89 IPR001841 -
Accr4g02041 248 MobiDBLite consensus disorder prediction 185 248 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g02041 1 248 C3H Transcription Factor Family AT5G19430 55.642 2.80e-86 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g02041 - - qsa:O6P43_014716 318.546