Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g02040 ATGTGGTCTGGTGCCGCCGCGAGGTCGATCAATTATGGTCTCTCGCAGGACATGGGAGGCGGCATGCTGGGCCTCCGCGATCTCTACGTGGTGGCTCCGGCGTCGTCGTTTCACCACCACCACCACCACCATCACCATGACCCGTCAGTTATGACCGATCCTCATTCCGTGAACAGCTCTAACCCCGCAACCGCGCTCGGCGTCGGCGTTATTCCTCTCCTCACCACCACGCCGTGTCTCAGCCCGGCGAACATAGAGAACAACGAGGCAACAACATTGATGAGTAATCGAAGCCGAGGTGGCGCAATTCAGCTTTGGCAAGACCTGGAATCTGAACATGGTCATTATTTGAAGAAACAAGGTACAACGATGTTTGAGCTGAATGATAGTTCTGGGAATCTGGTTCAGAACGAGAATGGATTAACCGTCTCCGCGGCTAACAGCGGCGGCGTGGCCACGTGTCAGGACTGTGGGAACCAAGCGAAGAAGGATTGTATTTACAGGAGGTGTAGGACTTGCTGTAAGAGTCGGAGTTATGACTGCCCTACTCACGTGAAGAGCACGTGGGTGCCAGAGTCGCGTAGGAGGGAACGCCGCTTGATGGCCGCTGCAGCGGCTGCGGCAACCACTGCCGGTGGTGGTGGTGGATCCACCGGTGCTACTTCTGGTGCCAAGAAACCTAGACTCGTCACATCACAACAAACCACAACAAATTCTCACACTTCCACTTCTAATACCACTCCTCCTAGAAGCTTCGACACTAGTTCTAGCCACCAAGATGCGGGTTTTAAGGAATCACTACCGGGGCAAGTGCGGGCTCCGGCGGTGTTCAAGTGTGTTCGGGTGACGGCGGTGGATGACGGTCAGGATGAGTTTGCATATCAGGCTACTGTGAAGATTTGTGGCCATGTGTTTAAAGGGTTTCTGTATGATCAAGGGGTTGAAGGTAGAGAGGCGTATCCAAATTTGTCAGAGCTTCATCTTGGTGGCAGTGGTGGTGGCTGTGGCCGAGGTGGTGGTGGTGGTGGAGGAAATGGGGCTTCTTCTTCATCACCAATGCTGGATCCATCTGATATGTTTGCAGCTTCAGGTGGAGGCTTACTTGGAGGAGGATCTACTTATGGTAATCCAATAAATTAA 1140 0.5333 MWSGAAARSINYGLSQDMGGGMLGLRDLYVVAPASSFHHHHHHHHHDPSVMTDPHSVNSSNPATALGVGVIPLLTTTPCLSPANIENNEATTLMSNRSRGGAIQLWQDLESEHGHYLKKQGTTMFELNDSSGNLVQNENGLTVSAANSGGVATCQDCGNQAKKDCIYRRCRTCCKSRSYDCPTHVKSTWVPESRRRERRLMAAAAAAATTAGGGGGSTGATSGAKKPRLVTSQQTTTNSHTSTSNTTPPRSFDTSSSHQDAGFKESLPGQVRAPAVFKCVRVTAVDDGQDEFAYQATVKICGHVFKGFLYDQGVEGREAYPNLSELHLGGSGGGCGRGGGGGGGNGASSSSPMLDPSDMFAASGGGLLGGGSTYGNPIN 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g02040 379 MobiDBLite consensus disorder prediction 200 267 - -
Accr4g02040 379 MobiDBLite consensus disorder prediction 337 379 - -
Accr4g02040 379 MobiDBLite consensus disorder prediction 39 59 - -
Accr4g02040 379 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 36 363 IPR007818 GO:0003700|GO:0006355
Accr4g02040 379 MobiDBLite consensus disorder prediction 224 263 - -
Accr4g02040 379 NCBIfam LRP1 C-terminal domain 267 314 IPR006511 -
Accr4g02040 379 NCBIfam putative zinc finger domain, LRP1 type 153 195 IPR006510 -
Accr4g02040 379 Pfam Domain of unknown function (DUF702) 152 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g02040 Accr-Chr4 25950054 25951364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g02040 9 359 C2H2 Transcription Factor Family AT5G12330 48.333 1.52e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Accr4g02040 DUF702 6.1e-60 No_clan