Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01988 ATGGAAGCATTCGTAAGTGCAGGAGCGATGGGAAGAGAGAAAGGATTATGGTGTTGTTGGTGTTTAGTGTTGTGGCCCACTATGCTTCTAATGGTGGGAGTTGTGAGTTATGAACTTTACGACAAAACCTGTACCTCTCATTGTGGCATTATCCCTATCTCATATCCATTCCGACTACCAAATGACCCACCCTACTGCGGCCACGCCGATTACGAGCTAGCCTGTGATGAAAACGACGTCACTCTGCTTAATATATCTGGATATCCCGGCTCCCTCAAAGTGACGGCAATAAACTACCACAACTTTAGAATCAAAGTCGTTGATCCAGGAATTCTGTTGCGCGATTGCTCATCTCTCCCTTTCTATTCCTTTTCCCAATACGAGTTCAACTATGTCAGGAATCCTTACGGTTATTATGAACGTACGTATAGTACTCTAAACAACCATTGCACAAAATCTATGGTATTCAAGCAGGTGGCGTACCTGAGCTGCAGCGAACCGGTGAGGGACGACACATCGTATGTGGATACGGCTCCTTGCGTGAAAGGAGGTGGCCATCTTTATGCCGTGGTTGGTGACTTGTTGGCTTCCCGGTTTCAACCCCAATGCCGTCTGAAATCTGTGACCCTCGTAGCCTCAAATTGGGAATCGTTGGTGGCTGATGGAATCAAGTCCTACGCTGATATTCACAAACTCCTTTCCCTTGGATTTGAACTTTCATGGTTTCGACGAGCTTGTGCTGATCGTAATTGTTCGGATGGTACTACCTGCGTTTTCAGCCCTGAAAATCGAAGCCTTCTTTGCCTTCGAGGGGAGAGAGACTGTACAAGTCCCCTGGGAAGAAATTATGAATCTTGTGGAAAGCTACCAAGGTTTCTCATATTTGCAGAAGATTTTCTGGAGGGAATTTGGAAAGGACTATACGGGATGGCGAACATTTCTAGGAGAGGCGGCACTTACTATGATTCTGGGCCATCAAAGCTTCTTATCAAATTAGGAGTGTTCACTGGAAGATTTCTTTTGCCATTTGTCACAGTCAGATTTTTGTTTGGTGTTGTACTGTTGTCTATGATTTTCATCTATACATGCCGAAAAAGACACTTGTCAATATATGAAGATGTTGAAGATTTTATAAGACTTCATGACCTCATTCCAATAAGGTACTCTTATAAGGATTTGAAGACAATGACCCAAAATTTCAAGATTAAGTTGGGTGAAGGAGGCTTCGCCACTGTGTATAAGGGAAAGCTAAGGAGTGGACCTGACGTTGCTATCAAAATGCTAGGTAAATCCAATAAAGCTAATGGCCAAGATTTTATGAGTGAAGTGGCAACTATTGGGAGGATACACCATTTCAATGTGGTACATCTTGTAGGGTTTTGTGTTGAAGGAACAAAACGTGCTCTTATCTATGAATTTATGTCCCATGGATCTTTGGATAAATATATTTTTTCTAAAGAAGAAAACAAGTCCTTGAGTTATCGTAAGATATATGAGATATCTCTAGGAGTGGCTCGTGGGATTGCTTACCTTCATCATGGATGTGAGATGCAAATATTGCATTTCGATATCAAGCCTCATAACATTCTTCTTGATGAAAACTTCACTCCAAAAGTTTCAGATTTTGGACTGGCACGTTTATATGCAATTGATGATGATATTGCCACTTTGACAGCGAGAGGAACAATGGGATATATAGCTCCTGAGTTGTTTTACAAGAATATTGGAAAAGTGTCTCATAAGGTTGATGTTTATAGTTTTGGGATGCTTCTGATGGAAATGACAAGTCAAAGAAGGAATTTGAATCCACAAGCAGAACATTCAAGCCAACTATACTATCCCTTATGGATCTATGACCAATTTGATGATAATAAAGATATAGAAATTGAAAATTTGATGGAAGAAGAAAAGGATTTAGTAAAGAAGATGTTCATAGTAGCACTTTGGTGCATACAACTAAAGCCTGTTGATCGTCCGTCAATGAACAAAGTAATAGAGATGTTAGAAGCAAATGATGTTTCAAGTCTTCAAATGCCTCCAAAACCCTCTCTATATCCTAATGAGAGAGTTTTAGTGGATGATGTGTCCAACTCTGATGAAATATCATCCGTTGTTTCTATACATTCTCATGGTAATATTGGTGAGGGGACCAAGTAA 2157 0.4057 MEAFVSAGAMGREKGLWCCWCLVLWPTMLLMVGVVSYELYDKTCTSHCGIIPISYPFRLPNDPPYCGHADYELACDENDVTLLNISGYPGSLKVTAINYHNFRIKVVDPGILLRDCSSLPFYSFSQYEFNYVRNPYGYYERTYSTLNNHCTKSMVFKQVAYLSCSEPVRDDTSYVDTAPCVKGGGHLYAVVGDLLASRFQPQCRLKSVTLVASNWESLVADGIKSYADIHKLLSLGFELSWFRRACADRNCSDGTTCVFSPENRSLLCLRGERDCTSPLGRNYESCGKLPRFLIFAEDFLEGIWKGLYGMANISRRGGTYYDSGPSKLLIKLGVFTGRFLLPFVTVRFLFGVVLLSMIFIYTCRKRHLSIYEDVEDFIRLHDLIPIRYSYKDLKTMTQNFKIKLGEGGFATVYKGKLRSGPDVAIKMLGKSNKANGQDFMSEVATIGRIHHFNVVHLVGFCVEGTKRALIYEFMSHGSLDKYIFSKEENKSLSYRKIYEISLGVARGIAYLHHGCEMQILHFDIKPHNILLDENFTPKVSDFGLARLYAIDDDIATLTARGTMGYIAPELFYKNIGKVSHKVDVYSFGMLLMEMTSQRRNLNPQAEHSSQLYYPLWIYDQFDDNKDIEIENLMEEEKDLVKKMFIVALWCIQLKPVDRPSMNKVIEMLEANDVSSLQMPPKPSLYPNERVLVDDVSNSDEISSVVSIHSHGNIGEGTK 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01988 718 Pfam Protein kinase domain 402 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr4g01988 718 ProSitePatterns Protein kinases ATP-binding region signature. 404 426 IPR017441 GO:0005524
Accr4g01988 718 SMART serkin_6 398 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr4g01988 718 Gene3D Transferase(Phosphotransferase) domain 1 474 678 - -
Accr4g01988 718 ProSitePatterns Serine/Threonine protein kinases active-site signature. 519 531 IPR008271 GO:0004672|GO:0006468
Accr4g01988 718 FunFam PR5-like receptor kinase 474 680 - -
Accr4g01988 718 ProSiteProfiles Protein kinase domain profile. 398 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr4g01988 718 PANTHER RUST RESISTANCE KINASE LR10-RELATED 372 689 IPR045874 GO:0004672
Accr4g01988 718 Gene3D Phosphorylase Kinase; domain 1 375 473 - -
Accr4g01988 718 Pfam Wall-associated receptor kinase galacturonan-binding 44 108 IPR025287 GO:0030247
Accr4g01988 718 FunFam serine/threonine-protein kinase PBS1-like 369 473 - -
Accr4g01988 718 SUPERFAMILY Protein kinase-like (PK-like) 384 669 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01988 Accr-Chr4 23815583 23821258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01988 387 703 Receptor kinase-like Gene Family AT5G38280 48.607 3.40e-99 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Accr4g01988 PK_Tyr_Ser-Thr 5.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01988 - - pcin:129321062 762.296