Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01942 ATGGAGGTTGAAAGTAGTAAAATTAATAATATGGTGAAGAATGATGAAGAGGAAGAGGAAGATGAGGAGAAAGGGATGCTTCCGGGGTTCAGATTCCATCCAACAGATGAAGAATTGGTAGGGTTTTATCTCACAAGGAAGGTTCAGAAGAAGACTCTTCGTATTGAACTCATCAAACATATTGATATCTACAAATACGATCCCTGGGATCTCCCAAAGGCGAGCGGGAGCCTAGGGGAGAAGGAATGGTATTTCTTCTGCAAGAGGGGGAGGAAGTATAGGAACAGCATAAGGCCAAACAGGGTGACTGGGTCAGGATTCTGGAAGGCAACGGGAATTGACAAGTCCATTTACAATAATGCCCTCACCCACTGCATTGGCCTCAAGAAGTCCCTCGTCTATTACAAGGGCAGTGCTGGTAAAGGCACCAAGACTGATTGGATGATGCATGAGTTTCGTCTCCCTCCTGATAACCCTACCACCAATCATCTCCAAGAAGCTGAAGTGTGGACACTTTGTAGAATATTCAAAAGAATCCCCTCCTACAGAAAATACACACCAACTTCCAAAGATACAAGAAAAGCAGCAGCAACAACAGATTCAACCAACTCTAAAACATTAGAATTCGACAAATACTACTACTACAACAACAACATCAACAACAAGCCTTATAGCTCAACTTGTTTCAGAACATCATCTTCCTCATCAGACTCTATCATCACTCATCAACTTAATGATGAAAGAAGCCACTTTTTTCTGAGTCAGCTTGCAGCTAATCATCAAGTTCCTTCATCAATGGTGACTAACAATAGCTATTATAACCACAGCTTCGCGAATCATCATCATCAGAATGTGGAAGATATTCTTGTCAATGGTAATTGGGATGAACTCAGATCTGTTGTTCAGTTTTCTGCCGATCATCATCATCCCACTGTGCTATGA 942 0.4183 MEVESSKINNMVKNDEEEEEDEEKGMLPGFRFHPTDEELVGFYLTRKVQKKTLRIELIKHIDIYKYDPWDLPKASGSLGEKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKSIYNNALTHCIGLKKSLVYYKGSAGKGTKTDWMMHEFRLPPDNPTTNHLQEAEVWTLCRIFKRIPSYRKYTPTSKDTRKAAATTDSTNSKTLEFDKYYYYNNNINNKPYSSTCFRTSSSSSDSIITHQLNDERSHFFLSQLAANHQVPSSMVTNNSYYNHSFANHHHQNVEDILVNGNWDELRSVVQFSADHHHPTVL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01942 313 ProSiteProfiles NAC domain profile. 26 178 IPR003441 GO:0003677|GO:0006355
Accr4g01942 313 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 263 - -
Accr4g01942 313 Pfam No apical meristem (NAM) protein 28 154 IPR003441 GO:0003677|GO:0006355
Accr4g01942 313 MobiDBLite consensus disorder prediction 1 27 - -
Accr4g01942 313 Gene3D NAC domain 35 181 IPR036093 GO:0003677|GO:0006355
Accr4g01942 313 FunFam NAC domain-containing protein 35 35 181 - -
Accr4g01942 313 SUPERFAMILY NAC domain 24 177 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01942 Accr-Chr4 23005654 23011669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01942 11 178 NAC Transcription Factor Family AT5G39820 57.368 2.47e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr4g01942 NAM 1.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01942 - - pcin:129317195 453.366