Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01889 ATGGAGGCTCCAAATGACCTGCAAGTCGCAGTAGCAGGAGGAGGAATTGGAGGGTCATGTTCATCTCATAATCATAATCAGAAGAAGAGTGGAAGAGGCAAAATAGAGATAAAGAGGATAGAGAACACAACAAACAGGCAAGTTACTTTCTGTAAGAGACGTAATGGCTTACTCAAGAAGGCTTATGAATTGTCTGTTCTTTGCGATGCTGAAGTCGCCCTCGTCGTCTTCTCTAGCCGTGGTCGTCTCTACGAGTACGCCAACAACAGTGTTAGAGCAACCATTGAAAGGTACAAGAAAGCATGTGCTGCTTCCTCAAATACGGAATCTGTAGCTGAAGCTAACACCCAGTTTTATCAGCAAGAATCATCCAAGTTAAGAAAGCAGATACACGACATTCAGAATTTAAACAGGCACATTCTGGGGGAAGCTCTGAGCTCCTTGAGTCTGAAGGAGCTTAAAAACCTAGAGGGCAGACTAGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCACGAAACACTGTTTGCTGAAGTCGAGTTCATGCAAAAACGGGAAATGGAGCTTCAAAACCATAACAATTATCTACGAGCAAAGATAGCAGAACAGGAGAGAGCAGCACAGCAGCAGCAGCAATCGAGTGTGATGCAGCAGCAGGGAAGTGTGTGTGAGTCGATGCCCTCACAATCATCTTATGATCGCAACTTCTTCCCTGTTAATCTCTTGTCCTCTAATAATCATCATCCCTATTCTTCTCATGATCATGATCACACTGCCCTCCAGCTTGTGTAA 792 0.4407 MEAPNDLQVAVAGGGIGGSCSSHNHNQKKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATIERYKKACAASSNTESVAEANTQFYQQESSKLRKQIHDIQNLNRHILGEALSSLSLKELKNLEGRLEKGLSRVRSRKHETLFAEVEFMQKREMELQNHNNYLRAKIAEQERAAQQQQQSSVMQQQGSVCESMPSQSSYDRNFFPVNLLSSNNHHPYSSHDHDHTALQLV 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01889 263 ProSitePatterns MADS-box domain signature. 32 86 IPR002100 GO:0003677|GO:0046983
Accr4g01889 263 Pfam K-box region 114 200 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr4g01889 263 SMART madsneu2 30 89 IPR002100 GO:0003677|GO:0046983
Accr4g01889 263 FunFam agamous-like MADS-box protein AGL11 42 125 - -
Accr4g01889 263 MobiDBLite consensus disorder prediction 207 227 - -
Accr4g01889 263 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 39 86 IPR002100 GO:0003677|GO:0046983
Accr4g01889 263 SUPERFAMILY SRF-like 31 106 IPR036879 GO:0003677|GO:0046983
Accr4g01889 263 ProSiteProfiles MADS-box domain profile. 30 90 IPR002100 GO:0003677|GO:0046983
Accr4g01889 263 Gene3D - 42 138 IPR036879 GO:0003677|GO:0046983
Accr4g01889 263 PRINTS MADS domain signature 52 67 IPR002100 GO:0003677|GO:0046983
Accr4g01889 263 PRINTS MADS domain signature 32 52 IPR002100 GO:0003677|GO:0046983
Accr4g01889 263 PRINTS MADS domain signature 67 88 IPR002100 GO:0003677|GO:0046983
Accr4g01889 263 MobiDBLite consensus disorder prediction 14 34 - -
Accr4g01889 263 CDD MADS_MEF2_like 31 107 IPR033896 GO:0000977|GO:0045944
Accr4g01889 263 Coils Coil 193 213 - -
Accr4g01889 263 PANTHER SERUM RESPONSE FACTOR HOMOLOG 32 211 - -
Accr4g01889 263 ProSiteProfiles K-box domain profile. 116 206 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01889 Accr-Chr4 21263324 21268163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01889 17 263 MADS-box Gene Family AT2G42830 67.589 3.04e-114 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Accr4g01889 K-box 6.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01889 K09264 - gmx:100817239 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g01889 4 21263324 21268163 Accr4g01889 4 21263324 21268163 ECH