Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01848 ATGGCTTCCGGTTTTGTATTCGAAGCTCCCAGCGACGAAGAAATCGAACGCTCTGATTCTGAAGACGAAGAACAGGAACAAAGCCAAGAAGAGGAAGCAGAAGAGCAGAGTGGTTCTGATAATGATGATGACGATGGTGATGCAGAAGAAGAAGAAGAAGGAGCACGAGTTTCGAATAAGAAAACTCAATCTCCGTGGGACTTTGCGAAGTACTCTGAGTCTGTCGCGGAGGAACATGCCCGACGAAGCACTACCTCAGTGGATCAGAAAATTGCCAAAGCCATTAAAGAACGCTACGCCCCGCTCGGAAAGCCCGTTGAAGACGACCAGGAGAGCACGGAGTCCGAACCCGACAAACAAGAGGATTATAGACCAGAAGAGGAAGAAGATGAAGGTGGCAATGAAGGTGAGAGCAAGTCTTTCTTCGCGCCATCTGACGGAGCTTCATTCCATGCTGACTCATTTATGGAGCTTAATTTGTCGCGTCCTTTGCTTCGTGCTTGTGAGGCCTTAGGATACGTTAAACCGACACCAATTCAGGCAGCGTGTATACCACTTGCATTGACTGGTCGTGATATTTGTGGAAGTGCCATTACCGGTTCTGGGAAGACAGCTGCATTCTCACTGCCTACTCTGGAGAGGCTTTTGTATCGTCCAAAACGTGTGCAGGCCATAAGAGTCCTCATTCTTACTCCAACCAGAGAATTGGCGGTTCAAGTTCACAGTATGATTGAGAAGCTTGCTCAGTTTACTGATATAAGGTGTTGCCTGGTCGTTGGGGGTCTGTCTACAAAGGTGCAAGAGGCAGCCTTGAGATCTATGCCAGATATTGTTATTGCTACTCCAGGACGCATGATAGATCATTTACGCAATTCCATGTCAGTGGATTTAGATGATCTTGCTGTTCTTATTCTTGATGAGGCAGATCGTCTATTAGAGCTTGGATTTAATGCTGAAATTCATGAACTTGTTCGTTTGTGTCCCAAGAAGAGGCAGACCATGCTATTTTCAGCTACCATGACTGAGGAGGTTGATGAACTAATTAAACTTTCTCTAACAAAACCCTTGCGTCTTTCTGCTGACCCATCCACAAAACGGCCAGCAACCTTGACTGAGGAGGTGGTTAGAGTAAGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCATTGTGTTCCAAAACTTTTACATCTAATGTGATCATATTCAGTGGAACAAAACAAGCTGCACATAGGTTGAAGATTATATTAGGATTAGCTGGCTTAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAGGCCCAGCGTCTTGAATCTTTAGAGCAGTTTAGGAAGCAGCAAGTTGACTTTTTGGTTGCAACTGATGTGGCTGCTCGAGGCCTAGATATCATTGGTGTTCAAACAGTCATCAACTTTGCATGTCCACGAGATCTTACCAGTTATGTTCATCGAGTAGGACGTACTGCAAGAGCGGGCAGAGAAGGATATGCTGTCACGTTCGTGACTGACAATGACCGGTCGCTATTAAAAGCAATTGCAAAGAGGGCGGGTTCAAAGCTGAAGAGCCGTATTGTTGCAGAACAATCTGTAATTAAGTGGTCTCAAACTATTGAGCAAATGGAGGATGAAATTGCTGCAATTCTTGAAGAAGAGAGGGAGGAAAGAGCCCTAAGGAAAGCTGAAATGGAAGCGACGAAGGCTGAAAATATGATTGAGCATAGGGAAGAGATATATTCTCGGCCCAAAAGAACTTGGTTTATGACAGGGACGGAGAAGAAGCTTGCTGCAAAGGCAGCCAAGACGTCTAACAAAAAGGACAAGAGCTCTGGGAAGGAAGTAATTAGTGCGGAACAAGCTGAAGCCCTAAGAATGAAGGAAAAGAGGAAGCGAGAGCGAGAAAAAAATTTGCCCAGGAAGAAGCGCAGAAAATTGGAAGCTGCTAGAGAGATGTTGGAGGATGAAGGTCATTTTGAGAAGCCAAAAGCCAATGAGAAAAATAAGAAAGAGAAGACTGGAACGTCACTTGTTGATGTGGCATACCGACGAGCAAAAGCAGCTAAAGCAGTAAAGAAGGCTCTAGATGCAGGCAAAATTGTGAAGGGGGGTAAGAATAAATCGAATAATTCTTCACGCAAGACTCCTTCAAGGACAGAGGAAATGCGGGAGCTTTTCCAAACTGACATGACTGAGAAAAAACAAAAAAGAGTTGGTGGACCAGGGAAGAAGTCTAAAAGTTCATTCAAAAGCAAGTCAAGGTATAAGCGCAGGTAG 2274 0.4472 MASGFVFEAPSDEEIERSDSEDEEQEQSQEEEAEEQSGSDNDDDDGDAEEEEEGARVSNKKTQSPWDFAKYSESVAEEHARRSTTSVDQKIAKAIKERYAPLGKPVEDDQESTESEPDKQEDYRPEEEEDEGGNEGESKSFFAPSDGASFHADSFMELNLSRPLLRACEALGYVKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPTLERLLYRPKRVQAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRSMPDIVIATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFNAEIHELVRLCPKKRQTMLFSATMTEEVDELIKLSLTKPLRLSADPSTKRPATLTEEVVRVRRMREVNQEAVLLALCSKTFTSNVIIFSGTKQAAHRLKIILGLAGLKAAELHGNLTQAQRLESLEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSVIKWSQTIEQMEDEIAAILEEEREERALRKAEMEATKAENMIEHREEIYSRPKRTWFMTGTEKKLAAKAAKTSNKKDKSSGKEVISAEQAEALRMKEKRKREREKNLPRKKRRKLEAAREMLEDEGHFEKPKANEKNKKEKTGTSLVDVAYRRAKAAKAVKKALDAGKIVKGGKNKSNNSSRKTPSRTEEMRELFQTDMTEKKQKRVGGPGKKSKSSFKSKSRYKRR 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01848 757 MobiDBLite consensus disorder prediction 692 757 - -
Accr4g01848 757 CDD DEADc_DDX27 164 359 - -
Accr4g01848 757 CDD SF2_C_DEAD 386 502 - -
Accr4g01848 757 Gene3D - 360 529 IPR027417 -
Accr4g01848 757 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 153 181 IPR014014 GO:0003724
Accr4g01848 757 MobiDBLite consensus disorder prediction 738 757 - -
Accr4g01848 757 MobiDBLite consensus disorder prediction 598 675 - -
Accr4g01848 757 SMART ultradead3 172 373 IPR014001 -
Accr4g01848 757 MobiDBLite consensus disorder prediction 639 675 - -
Accr4g01848 757 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 304 312 IPR000629 -
Accr4g01848 757 MobiDBLite consensus disorder prediction 14 52 - -
Accr4g01848 757 Pfam Helicase conserved C-terminal domain 389 493 IPR001650 -
Accr4g01848 757 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 111 712 - -
Accr4g01848 757 MobiDBLite consensus disorder prediction 598 632 - -
Accr4g01848 757 MobiDBLite consensus disorder prediction 713 737 - -
Accr4g01848 757 MobiDBLite consensus disorder prediction 96 110 - -
Accr4g01848 757 MobiDBLite consensus disorder prediction 1 67 - -
Accr4g01848 757 SMART helicmild6 412 493 IPR001650 -
Accr4g01848 757 Coils Coil 615 637 - -
Accr4g01848 757 MobiDBLite consensus disorder prediction 96 143 - -
Accr4g01848 757 Pfam DEAD/DEAH box helicase 177 347 IPR011545 GO:0003676|GO:0005524
Accr4g01848 757 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 358 IPR014001 -
Accr4g01848 757 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 388 532 IPR001650 -
Accr4g01848 757 Gene3D - 113 359 IPR027417 -
Accr4g01848 757 MobiDBLite consensus disorder prediction 111 134 - -
Accr4g01848 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 513 IPR027417 -
Accr4g01848 757 Coils Coil 531 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01848 Accr-Chr4 20158135 20166129 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01848 133 515 Eukaryotic Initiation Factors Gene Family AT1G72730 33.420 4.11e-52 185