Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01788 ATGCCAAAAGCAGCTGCTTCTTCTTCTTTAACTGATACTGATCATTCAATATTCTCACGCAAGTATTATCATGTGTTCTTGAGTTTTAGAGGCGATGATACCCGTAAGGGTTTTATAGACCACTTATACGCTGAGTTGCAGCGAAAAGGGATCGTCACGTTCAAGGACGACCAAGAGCTCAAGAGTGGAGAGCTTATTCCGGAGAAACTCATGAAGGCCATTGAGGAATCCATGTTTGCCATCGTTGTTCTCTCCAAAAACTATGCTTCTTCGTCGTGGTGCCTGAATGAGCTGCACAAGATTGTTGAATCTAGACATGATTTGGATCGAACAGTTTTCCCTGTTTTCTATGATGTTGATCCTTCTTATGTAAGACATCAAAAGGGAAGTATCGCTATGGCTTTCAAGAAACATGAAGCAACATTTGCAGAAGAAAAGATTCAGAGTTGGAGAGAAGCTCTCGCCAAGGTGGCTAACTTAACTGGATGGGAAACTAAGAATAGGAATGAAGTAGGTCTAATTGGAGACATTACAGCAGCAGTATGGACTCAAATAAGCATTAAATTACCATCAAACTTTGACTATTTACTTAGGATCCAACGACAAGCAAACAAGTTGATCTCTCTTTTAAAGATAGATTTAGATCATAAATGCTTCATAGGAATATGGGGTATGGGAGGATCAGGCAAAACAACTCTTGCTCGGGTTGTTTATGAAGCAATCCAAAGCAAATTTGAGATCACTTGCTTTCTTTCTAATATCAGAGAGAATTTATTAGTGGATAGTACTTGTGGTTTGGTTGACCTACAAAAGAAACTCCTCTCTTGTCTTCACCAAAAAAACATAGAGATCATTGACTCATATGGAGGAATGAGAGCAATAAGACACTTTTTCTGCAATAAAAAAGTTCTTATTGTTCTTGATGATGTGAGCCATATAAGCCAGTTAGAGAACTTAGCTGGAAACAAAGACTGGTTTGGTGATGGAAGTAAGATCATTGTGACCACAGAAGATTCACACTTGTTGAAAACACATGGGCAATTTGAGAAGTATGAGATTGAAACGCTGAATCACTATTTAGCCCTTAAGCTTTTGTGTCAGAAAGCATTTAAACAAAATAATCCTGAAGAAGGTTTTGTGGAGTTGTCTCAGAAAGTAGTACAACATGCTAGTGGCCTTCCTTTGGCACTTCAAGTTTTGGGTAAATTTCTATGTGGAAGAAGTCAAAGTGAGTGGAGAGATATGGTGGACAAGATGAAGAAGAAGCAAGATTTGCATAAAGATATTCTGAGGAAACTTAGGGTAAGTTTTGATGGGTTAGAAGACGAAGAGTTCAAGACGATATTTTTAGATATTGCTTGTTTTTTCAATAGAAAACCAGAAGTTTTTGTGATGAAAGTGTTGGAGAACTGTGGTCTTCATCCAACAATTGGTATCAATGTTCTTATTGAAAAATCGTTACTAAGTTATATTTCTTTCAAAAACGGTGATCGCCTTTTGTCTATGCATAATTTGCTTCAAGAAATGGGAAAGAACATTGTCTTGCAAGAATCTCCAAATGATGCAAGTAGAAGAAGCAGGTTGTGGTCTCAAGAAGAAATAGATCAAGTGCTAAAAGGAAATAATGGAACAGAAAAAGTTCAAAGCATGGGTTTAAATTTAGAACAGCCACATGAAGCAAATTGGCACCCAGATTGCTTCTCAAAGATGAGAAATCTCAGATTACTCTTCTTCAGAAACGTGCATCTTGTTCAGAATAGCCTCAATTCTCTTCCTAGTTCACTCAAAGTTCTTATATGGGAGCATTATCCTCTGAAAGCCTTGCCACAAAACATTGGTCAATTATATGAACTTGTAGAGATCACATTGTGCCATAGCAGAATTCAAAATCTCTGGAATGGAACACCGGTTTTAGACAAGCTTAAGTTCATTGATTTGAGCCACTCTAAAGATCTTATTGAAACTCCAGATTTCAGTAGGGTCCCAAACCTGGAGAGTTTGATTCTCGAAGGTTGCATCAACCTAGTTAAGATTCATGAATCTATGGGACATCTGAAGAAGCTAGTTAAGTTGAATCTGAAAGATTGCAGAAGTCTTGTAAACTTTCCAATTAATAAAGAAATGAATTCTCTTGAGGAATTCATTCATGTTGGATGCTCAAAACTTGGAAATCTTCTTGATAATCTGGGGAAATCTTCAACAAAACCACATAGGACCTCTTGCTTCTGTTGTGTCTCCTTTGCGAATAATCACTTAAAAATCACTCCAATGGGATTAAAGTTACCAGATTCTTTGTTAAGTCTCACATCATTGAGGGAATTGAATCTGAGTTTCTGCAATCTAAGTGATGGATCAATCCCTGAAGGTTTCAATGGATTATCATCTCTGGAAAAGTTGGATCTTAGAGGAAACAACTTCACTAACTTATCTGATCATGATAATGATGTCATCTCTAAACTTGTAAATCTTAAGTATCTTGATTTGAGTAATTGTGCTAAGCTTCAATCAATTCCACTGCTTCCACCAAACTTGATCACAGCATCTGCAAGTTTCTGCCCTTCCATGAAACCCTTACAAGATGTTCATCATCTCTTTGCTTCACCTCTCTCAAAGAATCGAAGCCTCCTGCTTCACGAAGGTGATATCACCTTGTTGCATGTTCAAGGGAATGCAATCCCAACCTGGTTTCAAAGACGAGATGATCACTTCTCTTCAGATGAAGAAGGATTCGGACCACGAGTATCTATACTAGTAGAGATTCCTTTCAACCAAGGTCAGACCAATGAATGGTTAAGAATTGGAGTGTGCCTCGCGGTAAACAGCAGAGAAATCAGAAGAGAAAAGAGAATTCATTGGAGCTACAAAGCCATTAATAATGAAGAAGATGAAAGATTTTGTCAAGGATCAGAACGAGAGTTCTATATTGGGAATGGATTACATTCTCCTAATCCTCATCTCTATATTGCTTTTATTCCCTTTAATACTCATAATTGTTGGTCGAATAATCTAAGAGGTGATGATCATGGTCGCCAACTTGTTTTAAGTCTTAGATTTAACATGCATTGTGATATTAAGGACTATGGTTGGCGGCTTATCTATAGCTCTTAG 3108 0.3755 MPKAAASSSLTDTDHSIFSRKYYHVFLSFRGDDTRKGFIDHLYAELQRKGIVTFKDDQELKSGELIPEKLMKAIEESMFAIVVLSKNYASSSWCLNELHKIVESRHDLDRTVFPVFYDVDPSYVRHQKGSIAMAFKKHEATFAEEKIQSWREALAKVANLTGWETKNRNEVGLIGDITAAVWTQISIKLPSNFDYLLRIQRQANKLISLLKIDLDHKCFIGIWGMGGSGKTTLARVVYEAIQSKFEITCFLSNIRENLLVDSTCGLVDLQKKLLSCLHQKNIEIIDSYGGMRAIRHFFCNKKVLIVLDDVSHISQLENLAGNKDWFGDGSKIIVTTEDSHLLKTHGQFEKYEIETLNHYLALKLLCQKAFKQNNPEEGFVELSQKVVQHASGLPLALQVLGKFLCGRSQSEWRDMVDKMKKKQDLHKDILRKLRVSFDGLEDEEFKTIFLDIACFFNRKPEVFVMKVLENCGLHPTIGINVLIEKSLLSYISFKNGDRLLSMHNLLQEMGKNIVLQESPNDASRRSRLWSQEEIDQVLKGNNGTEKVQSMGLNLEQPHEANWHPDCFSKMRNLRLLFFRNVHLVQNSLNSLPSSLKVLIWEHYPLKALPQNIGQLYELVEITLCHSRIQNLWNGTPVLDKLKFIDLSHSKDLIETPDFSRVPNLESLILEGCINLVKIHESMGHLKKLVKLNLKDCRSLVNFPINKEMNSLEEFIHVGCSKLGNLLDNLGKSSTKPHRTSCFCCVSFANNHLKITPMGLKLPDSLLSLTSLRELNLSFCNLSDGSIPEGFNGLSSLEKLDLRGNNFTNLSDHDNDVISKLVNLKYLDLSNCAKLQSIPLLPPNLITASASFCPSMKPLQDVHHLFASPLSKNRSLLLHEGDITLLHVQGNAIPTWFQRRDDHFSSDEEGFGPRVSILVEIPFNQGQTNEWLRIGVCLAVNSREIRREKRIHWSYKAINNEEDERFCQGSEREFYIGNGLHSPNPHLYIAFIPFNTHNCWSNNLRGDDHGRQLVLSLRFNMHCDIKDYGWRLIYSS 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01788 1035 PRINTS Disease resistance protein signature 219 234 - -
Accr4g01788 1035 PRINTS Disease resistance protein signature 297 311 - -
Accr4g01788 1035 PRINTS Disease resistance protein signature 818 834 - -
Accr4g01788 1035 PRINTS Disease resistance protein signature 390 404 - -
Accr4g01788 1035 SUPERFAMILY "Winged helix" DNA-binding domain 428 539 IPR036390 -
Accr4g01788 1035 SMART till_3 22 160 IPR000157 GO:0007165
Accr4g01788 1035 Pfam NB-ARC domain 203 423 IPR002182 GO:0043531
Accr4g01788 1035 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 163 IPR035897 -
Accr4g01788 1035 Gene3D - 20 185 IPR035897 -
Accr4g01788 1035 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 452 IPR027417 -
Accr4g01788 1035 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 727 IPR044974 GO:0006952
Accr4g01788 1035 SMART LRR_typ_2 768 792 IPR003591 -
Accr4g01788 1035 SMART LRR_typ_2 793 816 IPR003591 -
Accr4g01788 1035 SMART LRR_typ_2 820 847 IPR003591 -
Accr4g01788 1035 Pfam TIR domain 23 186 IPR000157 GO:0007165
Accr4g01788 1035 ProSiteProfiles Leucine-rich repeat profile. 795 816 IPR001611 GO:0005515
Accr4g01788 1035 Gene3D - 355 441 IPR042197 -
Accr4g01788 1035 SUPERFAMILY L domain-like 519 873 - -
Accr4g01788 1035 ProSiteProfiles TIR domain profile. 21 185 IPR000157 GO:0007165
Accr4g01788 1035 Gene3D - 186 350 IPR027417 -
Accr4g01788 1035 Gene3D Ribonuclease Inhibitor 743 878 IPR032675 -
Accr4g01788 1035 Gene3D Ribonuclease Inhibitor 516 741 IPR032675 -
Accr4g01788 1035 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01788 Accr-Chr4 19195697 19202702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01788 19 838 WRKY Transcription Factor Family AT4G12020 30.155 7.59e-78 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01788 - - pcin:129318799 1023.46