Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01786 ATGTCGTCGCGACCGTCTGCCTTCGATGCTCTCATGTCAAGAGCCCGTGCCGCTGCCAAGAATCCCCAATCATCATCGCCCAAGAAACGAAAAACCCAGGATTCTAATTCAACCCCAAACCCTAAACTCCTAAAGTGCGCGAAAAGTACTGGTCAGTCTTTGGAACCCTGCTGCAACGATACCAAATGCATTGACATTAATTCCGAGAAGGTAGAAGAGCCGACAAAAGAAGACCTGAGCAATGGTGGGCTGAAGAGAACGCACGTTGTAGGTTCTCATGAGAAGATTACAGGACTAAAGAAAAAAGTTTCTCTTTTGAAGAAGAAGCCTGCAGATTTTGACCCTAGTTCGATATCTTGTTGGGACAAGGGTGAACCTGTGCCCTTTCTTTTTCTCTGTTTGGCATTTGATATGATTTCGGATGAAAGTGGACGGATTGTGATGACAGATATAGTGTGCAATATGCTGAGGACTGTCATGAACACTACTCCCGAGGATCTGGTGGCTGTTGTTTATCTGTCCTCAAATAAGATTGCGCCGGCACATGAAGGGTTGGAATTGGGAATAGGGGATGCTTCAATCATCAAGGCGCTTGCAGAGGCATGTGGAAGAACTGAGGCGCAGATAAAAAATCAGTATAAGGAAAAAGGTGATTTGGGCCTTGTTGCCAAAGCAAGCCGCTCATCTCAATCAATGATGCGGAAGCCTGATCCACTAACCATTAAGAAGGTTTTTAACACCTTTCGTCTTATTGCCAAGGAATCTGGTAAAGACAGCCAAGACAAGAAAAAGAACCACATCAAGGGACTTCTTGTTGCTGCAACTGACTGTGAACCTCAATATTTAATTCGTCTGCTTCAGTCAAAGTTGCGGATAGGGTATGCCGAGCAAACTCTCCTAGCTGCATTGGGCCAGGCTGCAGTATACACGGAAGGACATTCTGTACCGCCTTCGGAAATTCAGTCCCCTTTAGAAGAGGCTGCAAAGATGGTTAAACAAGTGTATTCTGTTCTTCCTCTGTATGACAAAATAATCCCTGCATTACTTAGTGGTGGTGTATGGAAACTTCCAGAGACGTGTAACTTTACTCCTGGTGTTCCAGTCGGACCCATGTTGTCTAAAGCAACTAAGGGTGTATCAGAAGTTCTAAATAAATTCCAAGGTGGAGAGTTTACATGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTACATGGATGATGGATCTGTTGAGATTTACAGTAGAAATGCTGAACGGAACACTGGAAAGTTTCCTGATGTTGTTGCTGCTATTTCAAGGTTAAAGAAATCGTCTGTGTCATCATTTGTTCTCGATTGTGAACTTGTTGCATATGACCGAGTAAAAAAGAAAATTCTTCCTTTTCAGGTTCTCAGTACTCGAGCTCGGAAAAATGTTTCTATGAGTGATATAAAAGTCGATGTATGCATATTTGCCTTTGATATCTTGTATCTTAATGGCGAGCCACTACTTCAGAAAAACCTAAAAATCCGGAGAGAGCATCTCTATGCCTCTTTCGGGGAAGATCCTGGATTTCTTCAGTTTGCAACAGCAATAGCATCAACTGATGTTGAGGAAATACAAAAGTTTCTTGATGGAGCAGTTGATGCTAGTTGTGAGGGTTTAATCATCAAAACTTTGGATAAAGATGCTACTTATGAACCTTCCAAACGGTCACTCAACTGGCTAAAACTGAAGAAAGATTATCTTGATAATATAGGGGACTCGCTGGATTTGGTACCTATTGCTGCTTTTCATGGTCGTGGGAAACGTACAGGGGTCTATGGAGCTTTTCTCCTTGCTTGCTATGATAGCAATAGTGAAGAATTTCAAAGCATTTGTAAAATAGGCACGGGATTCTCAGAGGCAATGCTTGCTGAACGTTCTGCCAGTCTACGTACTAAAGTGATTCCCAAACCAAAGCCTTATTATCGATATGCCGAGACAATCAATCCTGATGTATGGTTTGAAGCCTCTGAGGTGTGGGAGGTGAAAGCAGCAGACTTGACCATCAGTCCTGTTCACCGTGCTGCAGTAGGCATTGTAGACTCAGATAAGGGTATATCTCTTCGGTTCCCTCGTCTTGTTCGAGTTCGGGATGACAAAGCTCCTGAACAAGCCTCAACATCTGAGATGGTTGGTGAAATGTATTCCGCCCAAAAGCACAATCAGCCAAACAACGAGGATGACAAAGAAGATTGA 2226 0.4322 MSSRPSAFDALMSRARAAAKNPQSSSPKKRKTQDSNSTPNPKLLKCAKSTGQSLEPCCNDTKCIDINSEKVEEPTKEDLSNGGLKRTHVVGSHEKITGLKKKVSLLKKKPADFDPSSISCWDKGEPVPFLFLCLAFDMISDESGRIVMTDIVCNMLRTVMNTTPEDLVAVVYLSSNKIAPAHEGLELGIGDASIIKALAEACGRTEAQIKNQYKEKGDLGLVAKASRSSQSMMRKPDPLTIKKVFNTFRLIAKESGKDSQDKKKNHIKGLLVAATDCEPQYLIRLLQSKLRIGYAEQTLLAALGQAAVYTEGHSVPPSEIQSPLEEAAKMVKQVYSVLPLYDKIIPALLSGGVWKLPETCNFTPGVPVGPMLSKATKGVSEVLNKFQGGEFTCEYKYDGERAQIHYMDDGSVEIYSRNAERNTGKFPDVVAAISRLKKSSVSSFVLDCELVAYDRVKKKILPFQVLSTRARKNVSMSDIKVDVCIFAFDILYLNGEPLLQKNLKIRREHLYASFGEDPGFLQFATAIASTDVEEIQKFLDGAVDASCEGLIIKTLDKDATYEPSKRSLNWLKLKKDYLDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNSEEFQSICKIGTGFSEAMLAERSASLRTKVIPKPKPYYRYAETINPDVWFEASEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVRVRDDKAPEQASTSEMVGEMYSAQKHNQPNNEDDKED 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01786 741 Pfam DNA ligase N terminus 128 303 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Accr4g01786 741 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 362 580 - -
Accr4g01786 741 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 23 739 - -
Accr4g01786 741 MobiDBLite consensus disorder prediction 18 45 - -
Accr4g01786 741 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 394 402 IPR016059 GO:0003909
Accr4g01786 741 NCBIfam ATP-dependent DNA ligase 186 725 IPR000977 GO:0003910|GO:0005524|GO:0071897
Accr4g01786 741 FunFam DNA ligase 399 524 - -
Accr4g01786 741 Pfam ATP dependent DNA ligase C terminal region 599 710 IPR012309 GO:0003910|GO:0006281|GO:0006310
Accr4g01786 741 Gene3D - 105 372 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Accr4g01786 741 Pfam ATP dependent DNA ligase domain 370 574 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Accr4g01786 741 Gene3D - 380 578 - -
Accr4g01786 741 Gene3D - 579 740 IPR012340 -
Accr4g01786 741 CDD Adenylation_DNA_ligase_I_Euk 359 577 - -
Accr4g01786 741 CDD OBF_DNA_ligase_I 582 725 - -
Accr4g01786 741 ProSitePatterns ATP-dependent DNA ligase signature 2. 548 574 IPR016059 GO:0003909
Accr4g01786 741 FunFam DNA ligase 579 738 - -
Accr4g01786 741 SUPERFAMILY Nucleic acid-binding proteins 582 728 IPR012340 -
Accr4g01786 741 MobiDBLite consensus disorder prediction 709 741 - -
Accr4g01786 741 MobiDBLite consensus disorder prediction 1 45 - -
Accr4g01786 741 Gene3D DNA ligase/mRNA capping enzyme 399 524 - -
Accr4g01786 741 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 110 361 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Accr4g01786 741 ProSiteProfiles ATP-dependent DNA ligase family profile. 476 612 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Accr4g01786 741 FunFam DNA ligase 105 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01786 Accr-Chr4 19149665 19156061 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01786 2 741 Core DNA Replication Machinery Family AT1G08130 69.292 0.0 1066
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01786 K10747 - qsa:O6P43_028431 1148.27