Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01785 ATGCTCTCAATCCGCTCTTGCCTCTCCTCCCCTTTCTTTCACTCCGTCAGGTTTCGTCTTGAATTTTCCCTCACATCCCCTAAAACCTTTGCGTTCAAGCCCATCTTCTTCCCTACACGTAATCGCAGTCGCAGCATGTCGTCGCGACCGTCTGCCTTCGATGCTCTCATGTCAAGAGCCCGTGCCGCTGCCAAGAATCCCCAATCATCATCGCCCAAGAAACGAAAAACCCAGGATTCTAATTCAACCCCAAACCCTAAACTCCTAAAGTGCGCGAAAAGTACTGGTCAGTCTTTGGAACCCTGCTGCAACGATACCAAATGCATTGACATTAATTCCGAGAAGGTAGAAGAGCCGACAAAAGAAGACCTGAGCAATGGTGGGCTGAAGAGAACGCACGTTGTAGGTTCTCATGAGAAGATTACAGGACTAAAGAAAAAAGTTTCTCTTTTGAAGAAGAAGCCTGCAGATTTTGACCCTAGTTCGATATCTTGTTGGGACAAGGGTGAACCTGTGCCCTTTCTTTTTCTCTGTTTGGCATTTGATATGATTTCGGATGAAAGTGGACGGATTGTGATGACAGATATAGTGTGCAATATGCTGAGGACTGTCATGAACACTACTCCCGAGGATCTGGTGGCTGTTGTTTATCTGTCCTCAAATAAGATTGCGCCGGCACATGAAGGGTTGGAATTGGGAATAGGGGATGCTTCAATCATCAAGGCGCTTGCAGAGGCATGTGGAAGAACTGAGGCGCAGATAAAAAATCAGTATAAGGAAAAAGGTGATTTGGGCCTTGTTGCCAAAGCAAGCCGCTCATCTCAATCAATGATGCGGAAGCCTGATCCACTAACCATTAAGAAGGTTTTTAACACCTTTCGTCTTATTGCCAAGGAATCTGGTAAAGACAGCCAAGACAAGAAAAAGAACCACATCAAGGGACTTCTTGTTGCTGCAACTGACTGTGAACCTCAATATTTAATTCGTCTGCTTCAGTCAAAGTTGCGGATAGGGTATGCCGAGCAAACTCTCCTAGCTGCATTGGGCCAGGCTGCAGTATACACGGAAGGACATTCTGTACCGCCTTCGGAAATTCAGTCCCCTTTAGAAGAGGCTGCAAAGATGGTTAAACAAGTGTATTCTGTTCTTCCTCTGTATGACAAAATAATCCCTGCATTACTTAGTGGTGGTGTATGGAAACTTCCAGAGACGTGTAACTTTACTCCTGGTGTTCCAGTCGGACCCATGTTGTCTAAAGCAACTAAGGGTGTATCAGAAGTTCTAAATAAATTCCAAGGTGGAGAGTTTACATGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTACATGGATGATGGATCTGTTGAGATTTACAGTAGAAATGCTGAACGGAACACTGGAAAGTTTCCTGATGTTGTTGCTGCTATTTCAAGGTTAAAGAAATCGTCTGTGTCATCATTTGTTCTCGATTGTGAACTTGTTGCATATGACCGAGTAAAAAAGAAAATTCTTCCTTTTCAGGTTCTCAGTACTCGAGCTCGGAAAAATGTTTCTATGAGTGATATAAAAGTCGATGTATGCATATTTGCCTTTGATATCTTGTATCTTAATGGCGAGCCACTACTTCAGAAAAACCTAAAAATCCGGAGAGAGCATCTCTATGCCTCTTTCGGGGAAGATCCTGGATTTCTTCAGTTTGCAACAGCAATAGCATCAACTGATGTTGAGGAAATACAAAAGTTTCTTGATGGAGCAGTTGATGCTAGTTGTGAGGGTTTAATCATCAAAACTTTGGATAAAGATGCTACTTATGAACCTTCCAAACGGTCACTCAACTGGCTAAAACTGAAGAAAGATTATCTTGATAATATAGGGGACTCGCTGGATTTGGTACCTATTGCTGCTTTTCATGGTCGTGGGAAACGTACAGGGGTCTATGGAGCTTTTCTCCTTGCTTGCTATGATAGCAATAGTGAAGAATTTCAAAGCATTTGTAAAATAGGCACGGGATTCTCAGAGGCAATGCTTGCTGAACGTTCTGCCAGTCTACGTACTAAAGTGATTCCCAAACCAAAGCCTTATTATCGATATGCCGAGACAATCAATCCTGATGTATGGTTTGAAGCCTCTGAGGTGTGGGAGGTGAAAGCAGCAGACTTGACCATCAGTCCTGTTCACCGTGCTGCAGTAGGCATTGTAGACTCAGATAAGGGTATATCTCTTCGGTTCCCTCGTCTTGTTCGAGTTCGGGATGACAAAGCTCCTGAACAAGCCTCAACATCTGAGATGGTTGGTGAAATGTATTCCGCCCAAAAGCACAATCAGCCAAACAACGAGGATGACAAAGAAGATTGA 2361 0.4363 MLSIRSCLSSPFFHSVRFRLEFSLTSPKTFAFKPIFFPTRNRSRSMSSRPSAFDALMSRARAAAKNPQSSSPKKRKTQDSNSTPNPKLLKCAKSTGQSLEPCCNDTKCIDINSEKVEEPTKEDLSNGGLKRTHVVGSHEKITGLKKKVSLLKKKPADFDPSSISCWDKGEPVPFLFLCLAFDMISDESGRIVMTDIVCNMLRTVMNTTPEDLVAVVYLSSNKIAPAHEGLELGIGDASIIKALAEACGRTEAQIKNQYKEKGDLGLVAKASRSSQSMMRKPDPLTIKKVFNTFRLIAKESGKDSQDKKKNHIKGLLVAATDCEPQYLIRLLQSKLRIGYAEQTLLAALGQAAVYTEGHSVPPSEIQSPLEEAAKMVKQVYSVLPLYDKIIPALLSGGVWKLPETCNFTPGVPVGPMLSKATKGVSEVLNKFQGGEFTCEYKYDGERAQIHYMDDGSVEIYSRNAERNTGKFPDVVAAISRLKKSSVSSFVLDCELVAYDRVKKKILPFQVLSTRARKNVSMSDIKVDVCIFAFDILYLNGEPLLQKNLKIRREHLYASFGEDPGFLQFATAIASTDVEEIQKFLDGAVDASCEGLIIKTLDKDATYEPSKRSLNWLKLKKDYLDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNSEEFQSICKIGTGFSEAMLAERSASLRTKVIPKPKPYYRYAETINPDVWFEASEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVRVRDDKAPEQASTSEMVGEMYSAQKHNQPNNEDDKED 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01785 786 NCBIfam ATP-dependent DNA ligase 231 770 IPR000977 GO:0003910|GO:0005524|GO:0071897
Accr4g01785 786 FunFam DNA ligase 444 569 - -
Accr4g01785 786 SUPERFAMILY Nucleic acid-binding proteins 627 773 IPR012340 -
Accr4g01785 786 Gene3D - 425 623 - -
Accr4g01785 786 Gene3D - 150 417 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Accr4g01785 786 MobiDBLite consensus disorder prediction 60 90 - -
Accr4g01785 786 Gene3D - 624 785 IPR012340 -
Accr4g01785 786 MobiDBLite consensus disorder prediction 63 90 - -
Accr4g01785 786 Pfam DNA ligase N terminus 173 348 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Accr4g01785 786 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 65 784 - -
Accr4g01785 786 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 407 625 - -
Accr4g01785 786 FunFam DNA ligase 624 783 - -
Accr4g01785 786 Pfam ATP dependent DNA ligase domain 415 619 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Accr4g01785 786 CDD Adenylation_DNA_ligase_I_Euk 404 622 - -
Accr4g01785 786 ProSiteProfiles ATP-dependent DNA ligase family profile. 521 657 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Accr4g01785 786 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 439 447 IPR016059 GO:0003909
Accr4g01785 786 Pfam ATP dependent DNA ligase C terminal region 644 755 IPR012309 GO:0003910|GO:0006281|GO:0006310
Accr4g01785 786 CDD OBF_DNA_ligase_I 627 770 - -
Accr4g01785 786 ProSitePatterns ATP-dependent DNA ligase signature 2. 593 619 IPR016059 GO:0003909
Accr4g01785 786 FunFam DNA ligase 150 417 - -
Accr4g01785 786 MobiDBLite consensus disorder prediction 754 786 - -
Accr4g01785 786 Gene3D DNA ligase/mRNA capping enzyme 444 569 - -
Accr4g01785 786 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 155 406 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01785 Accr-Chr4 19149530 19156061 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01785 44 786 Core DNA Replication Machinery Family AT1G08130 69.057 0.0 1066
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01785 K10747 - qsa:O6P43_028431 1160.98