Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01784 ATGTTACTGTGTACAACGGGCAAGTTTCGTCTTGAATTTTCCCTCACATCCCCTAAAACCTTTGCGTTCAAGCCCATCTTCTTCCCTACACGTAATCGCAGTCGCAGCATGTCGTCGCGACCGTCTGCCTTCGATGCTCTCATGTCAAGAGCCCGTGCCGCTGCCAAGAATCCCCAATCATCATCGCCCAAGAAACGAAAAACCCAGGATTCTAATTCAACCCCAAACCCTAAACTCCTAAAGTGCGCGAAAAGTACTGGTCAGTCTTTGGAACCCTGCTGCAACGATACCAAATGCATTGACATTAATTCCGAGAAGGTAGAAGAGCCGACAAAAGAAGACCTGAGCAATGGTGGGCTGAAGAGAACGCACGTTGTAGGTTCTCATGAGAAGATTACAGGACTAAAGAAAAAAGTTTCTCTTTTGAAGAAGAAGCCTGCAGATTTTGACCCTAGTTCGATATCTTGTTGGGACAAGGGTGAACCTGTGCCCTTTCTTTTTCTCTGTTTGGCATTTGATATGATTTCGGATGAAAGTGGACGGATTGTGATGACAGATATAGTGTGCAATATGCTGAGGACTGTCATGAACACTACTCCCGAGGATCTGGTGGCTGTTGTTTATCTGTCCTCAAATAAGATTGCGCCGGCACATGAAGGGTTGGAATTGGGAATAGGGGATGCTTCAATCATCAAGGCGCTTGCAGAGGCATGTGGAAGAACTGAGGCGCAGATAAAAAATCAGTATAAGGAAAAAGGTGATTTGGGCCTTGTTGCCAAAGCAAGCCGCTCATCTCAATCAATGATGCGGAAGCCTGATCCACTAACCATTAAGAAGGTTTTTAACACCTTTCGTCTTATTGCCAAGGAATCTGGTAAAGACAGCCAAGACAAGAAAAAGAACCACATCAAGGGACTTCTTGTTGCTGCAACTGACTGTGAACCTCAATATTTAATTCGTCTGCTTCAGTCAAAGTTGCGGATAGGGTATGCCGAGCAAACTCTCCTAGCTGCATTGGGCCAGGCTGCAGTATACACGGAAGGACATTCTGTACCGCCTTCGGAAATTCAGTCCCCTTTAGAAGAGGCTGCAAAGATGGTTAAACAAGTGTATTCTGTTCTTCCTCTGTATGACAAAATAATCCCTGCATTACTTAGTGGTGGTGTATGGAAACTTCCAGAGACGTGTAACTTTACTCCTGGTGTTCCAGTCGGACCCATGTTGTCTAAAGCAACTAAGGGTGTATCAGAAGTTCTAAATAAATTCCAAGGTGGAGAGTTTACATGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTACATGGATGATGGATCTGTTGAGATTTACAGTAGAAATGCTGAACGGAACACTGGAAAGTTTCCTGATGTTGTTGCTGCTATTTCAAGGTTAAAGAAATCGTCTGTGTCATCATTTGTTCTCGATTGTGAACTTGTTGCATATGACCGAGTAAAAAAGAAAATTCTTCCTTTTCAGGTTCTCAGTACTCGAGCTCGGAAAAATGTTTCTATGAGTGATATAAAAGTCGATGTATGCATATTTGCCTTTGATATCTTGTATCTTAATGGCGAGCCACTACTTCAGAAAAACCTAAAAATCCGGAGAGAGCATCTCTATGCCTCTTTCGGGGAAGATCCTGGATTTCTTCAGTTTGCAACAGCAATAGCATCAACTGATGTTGAGGAAATACAAAAGTTTCTTGATGGAGCAGTTGATGCTAGTTGTGAGGGTTTAATCATCAAAACTTTGGATAAAGATGCTACTTATGAACCTTCCAAACGGTCACTCAACTGGCTAAAACTGAAGAAAGATTATCTTGATAATATAGGGGACTCGCTGGATTTGGTACCTATTGCTGCTTTTCATGGTCGTGGGAAACGTACAGGGGTCTATGGAGCTTTTCTCCTTGCTTGCTATGATAGCAATAGTGAAGAATTTCAAAGCATTTGTAAAATAGGCACGGGATTCTCAGAGGCAATGCTTGCTGAACGTTCTGCCAGTCTACGTACTAAAGTGATTCCCAAACCAAAGCCTTATTATCGATATGCCGAGACAATCAATCCTGATGTATGGTTTGAAGCCTCTGAGGTGTGGGAGGTGAAAGCAGCAGACTTGACCATCAGTCCTGTTCACCGTGCTGCAGTAGGCATTGTAGACTCAGATAAGGGTATATCTCTTCGGTTCCCTCGTCTTGTTCGAGTTCGGGATGACAAAGCTCCTGAACAAGCCTCAACATCTGAGATGGTTGGTGAAATGTATTCCGCCCAAAAGCACAATCAGCCAAACAACGAGGATGACAAAGAAGATTGA 2334 0.434 MLLCTTGKFRLEFSLTSPKTFAFKPIFFPTRNRSRSMSSRPSAFDALMSRARAAAKNPQSSSPKKRKTQDSNSTPNPKLLKCAKSTGQSLEPCCNDTKCIDINSEKVEEPTKEDLSNGGLKRTHVVGSHEKITGLKKKVSLLKKKPADFDPSSISCWDKGEPVPFLFLCLAFDMISDESGRIVMTDIVCNMLRTVMNTTPEDLVAVVYLSSNKIAPAHEGLELGIGDASIIKALAEACGRTEAQIKNQYKEKGDLGLVAKASRSSQSMMRKPDPLTIKKVFNTFRLIAKESGKDSQDKKKNHIKGLLVAATDCEPQYLIRLLQSKLRIGYAEQTLLAALGQAAVYTEGHSVPPSEIQSPLEEAAKMVKQVYSVLPLYDKIIPALLSGGVWKLPETCNFTPGVPVGPMLSKATKGVSEVLNKFQGGEFTCEYKYDGERAQIHYMDDGSVEIYSRNAERNTGKFPDVVAAISRLKKSSVSSFVLDCELVAYDRVKKKILPFQVLSTRARKNVSMSDIKVDVCIFAFDILYLNGEPLLQKNLKIRREHLYASFGEDPGFLQFATAIASTDVEEIQKFLDGAVDASCEGLIIKTLDKDATYEPSKRSLNWLKLKKDYLDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNSEEFQSICKIGTGFSEAMLAERSASLRTKVIPKPKPYYRYAETINPDVWFEASEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVRVRDDKAPEQASTSEMVGEMYSAQKHNQPNNEDDKED 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01784 777 Gene3D - 416 614 - -
Accr4g01784 777 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 146 397 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Accr4g01784 777 MobiDBLite consensus disorder prediction 51 81 - -
Accr4g01784 777 MobiDBLite consensus disorder prediction 54 81 - -
Accr4g01784 777 NCBIfam ATP-dependent DNA ligase 222 761 IPR000977 GO:0003910|GO:0005524|GO:0071897
Accr4g01784 777 ProSiteProfiles ATP-dependent DNA ligase family profile. 512 648 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Accr4g01784 777 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 430 438 IPR016059 GO:0003909
Accr4g01784 777 SUPERFAMILY Nucleic acid-binding proteins 618 764 IPR012340 -
Accr4g01784 777 CDD OBF_DNA_ligase_I 618 761 - -
Accr4g01784 777 CDD Adenylation_DNA_ligase_I_Euk 395 613 - -
Accr4g01784 777 Gene3D DNA ligase/mRNA capping enzyme 435 560 - -
Accr4g01784 777 MobiDBLite consensus disorder prediction 745 777 - -
Accr4g01784 777 Pfam ATP dependent DNA ligase domain 406 610 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Accr4g01784 777 Gene3D - 615 776 IPR012340 -
Accr4g01784 777 FunFam DNA ligase 141 408 - -
Accr4g01784 777 Pfam DNA ligase N terminus 164 339 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Accr4g01784 777 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 56 775 - -
Accr4g01784 777 Gene3D - 141 408 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Accr4g01784 777 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 398 616 - -
Accr4g01784 777 FunFam DNA ligase 435 560 - -
Accr4g01784 777 ProSitePatterns ATP-dependent DNA ligase signature 2. 584 610 IPR016059 GO:0003909
Accr4g01784 777 FunFam DNA ligase 615 774 - -
Accr4g01784 777 Pfam ATP dependent DNA ligase C terminal region 635 746 IPR012309 GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g01784 Accr-Chr4 19149179 19156061 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01784 35 777 Core DNA Replication Machinery Family AT1G08130 69.190 0.0 1066
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01784 K10747 - qsa:O6P43_028431 1153.66