Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g01606 ATGAGGATCACTGTAATGACAGCTGATGAACAAATACTTACGTTGGATGTTGATCCCCATGAATCTGTGGAAAACGTCAAAGCATTGCTTGAGGTAGAGACACAAGTGCCTCTTCAGCAACAGCAACTTCTCTTCAACGGAAGGGAGATGAGTAATTCTGAGAAATTGAGTGCTCTCGGTGTTAAAGATGAAGATTTGGTGATGATGGTCTCTGCTGCTCCTTCTGGTGCACCAGCCAATGCACCTGCCAAAGATTTAGGCTTCAATCCTGATGGATCTGCTGTAAATCCTGCTGCTTTCCAGCAGCACATTAGACAGGATTCTAACCTGATCGGTCAGCTCTTTCAGACCGATCCAGAGTTGGCACAAGCTATCTTAGGAAATGATCTCAACAAAATACAGGAGCTTTTACGAGTGCGTCATCAACAGAGATCTGAATTACAACGACAAAAAGACGAGGAACTTGCTCTTCTTTATGCAGATCCTTTTGATGTTGAAGCACAAAAGAAGATCGAAGCTGCCATTCGTCAGAAAGGAATTGATGAAAACTGGGCAGCTGCACTAGAATATAATCCCGAAGGTTTTGCAAGAGTGGTCATGTTGTATGTTGACATGGAGGTTAATGGTGTCCCACTGAAGGCATTTGTTGACAGTGGAGCCCAGTCCACAATCATATCAAAAAGTTGTGCTGAGCGCTGTGGATTGTTAAGACTTCTGGATCAGCGTTACAAGGGAATTGCTCATGGAGTTGGCCAATCAGAGATATTAGGACGAATACACGTAGCTCCAATCAAGATTGGGAATATATTCTACCCTTGCTCATTCTTAGTGCTTGATGCTCCTAACATGGAATTCCTTTTCGGGCTGGATATGCTCCGAAAGCACCAGTGTAGTATAGATTTAAAAGATAATGTTTTGCGAGTTGGTGGAGGAGAAGTTTCTGTGCCATTTTTGCAAGAAAAAGACATACCATCTCGGTTTCTGGATGAAGAAAGGTATGCTAAGGAAGCATCGAGCTCAGGTGCACTGGCAACAGGAACAGCAGATAGGAGTGGTAGTGCACCGAAAGGAGGCCAGTCTTCTGGAGGAGCTTCTGGTGGCACTTCCCAGGAGAGTGAGTTTGAAGCAAAAGTTTCAAAGCTGGTGGAGTTAGGGTTTGGAAGAGAAGCAGTGGTACAAGCTCTTAAATTGTTCAATGGCAACGAGGAACAGGCTGCCGGGTTTCTGTTTGGGGGTTTCTAG 1242 0.4461 MRITVMTADEQILTLDVDPHESVENVKALLEVETQVPLQQQQLLFNGREMSNSEKLSALGVKDEDLVMMVSAAPSGAPANAPAKDLGFNPDGSAVNPAAFQQHIRQDSNLIGQLFQTDPELAQAILGNDLNKIQELLRVRHQQRSELQRQKDEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEYNPEGFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGNIFYPCSFLVLDAPNMEFLFGLDMLRKHQCSIDLKDNVLRVGGGEVSVPFLQEKDIPSRFLDEERYAKEASSSGALATGTADRSGSAPKGGQSSGGASGGTSQESEFEAKVSKLVELGFGREAVVQALKLFNGNEEQAAGFLFGGF 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g01606 413 Coils Coil 133 153 - -
Accr4g01606 413 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Accr4g01606 413 MobiDBLite consensus disorder prediction 338 371 - -
Accr4g01606 413 SMART ubq_7 1 72 IPR000626 GO:0005515
Accr4g01606 413 Gene3D - 1 85 - -
Accr4g01606 413 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 369 412 IPR015940 -
Accr4g01606 413 CDD UBA_scDdi1_like 375 410 - -
Accr4g01606 413 SUPERFAMILY UBA-like 363 412 IPR009060 GO:0005515
Accr4g01606 413 SUPERFAMILY Ubiquitin-like 1 82 IPR029071 -
Accr4g01606 413 MobiDBLite consensus disorder prediction 340 371 - -
Accr4g01606 413 SUPERFAMILY Acid proteases 186 301 IPR021109 -
Accr4g01606 413 Gene3D - 346 412 - -
Accr4g01606 413 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Accr4g01606 413 CDD RP_DDI 185 308 IPR019103 GO:0004190|GO:0006508
Accr4g01606 413 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 409 - -
Accr4g01606 413 SMART uba_6 374 411 IPR015940 -
Accr4g01606 413 FunFam DNA damage inducible 1 homolog 2 178 325 - -
Accr4g01606 413 Pfam UBA/TS-N domain 375 408 IPR015940 -
Accr4g01606 413 Pfam Aspartyl protease 178 300 IPR019103 GO:0004190|GO:0006508
Accr4g01606 413 Gene3D Acid Proteases 179 325 IPR021109 -
Accr4g01606 413 CDD Ubl_Ddi1_like 1 70 IPR033882 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g01606 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 28.571 1.19e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g01606 K11885 - tcc:18593206 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g01606 4 16727182 16733575 Accr4g01606 4 16727182 16733575 ECH